RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PMS1P54277 932 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC25A52Q3SY17 297 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TTMPQ5BVD1 217 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 PCID2Q5JVF3 399 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF621Q6ZSS3 439 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 NLGN4XQ8N0W4 816 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ECHDC3Q96DC8 303 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 HNRNPABQ99729 332 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 R3HDMLQ9H3Y0 253 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 HCFC1R1Q9NWW0 138 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 MAPRE3Q9UPY8 281 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 V9GYQ6 96 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 A0A1W2PQC6 194 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TTC26A0AVF1 554 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 GRID2O43424 1007 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 USP1O94782 785 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ENO1P06733 434 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 SRPRAP08240 638 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CCNOP22674 350 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 MGAT1P26572 445 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC12A3P55017 1021 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 FGD3Q5JSP0 725 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ZBTB2Q8N680 514 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 OR2AP1Q8NGE2 309 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ZSCAN5AQ9BUG6 496 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 PCDH12Q9NPG4 1184 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 PIGNO95427 931 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CRATP43155 626 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CCNHP51946 323 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 SIGLEC14Q08ET2 396 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 LAIR1Q6GTX8 287 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 NCEH1Q6PIU2 408 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 Q6ZSR6 202 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM220AQ7Z4H9 259 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 OR52L1Q8NGH7 329 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 KCNMB3Q9NPA1 279 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TM7SF3Q9NS93 570 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 IMPAD1Q9NX62 359 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CYP3A7-CYP3A51PA0A087WV96 503 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 KIF1CO43896 1103 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 IL9P15248 144 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CYP3A7P24462 503 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 S100GP29377 79 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 DSG1Q02413 1049 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 KLC1Q07866 573 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 CUL3Q13618 768 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ECM1Q16610 540 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 NIPAL1Q6NVV3 410 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TAC4Q86UU9 113 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 TMEM200AQ86VY9 491 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 UBQLNLQ8IYU4 475 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC5A8Q8N695 610 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 C3orf20Q8ND61 904 aa9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM120BQ96EK7 910 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 ZFRQ96KR1 1074 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-202ENST00000381753 OR6C74A6NCV1 312 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 B4GAT1O43505 415 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PROSCO94903 275 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ERCC2P18074 760 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NUP62P37198 522 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TMED10P49755 219 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SMSP52788 366 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 DRG2P55039 364 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MANFP55145 182 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PPP2R2BQ00005 443 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NAE1Q13564 534 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ELAVL3Q14576 367 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF555Q8NEP9 628 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC22A8Q8TCC7 542 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TRPC4APQ8TEL6 797 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC2A11Q9BYW1 496 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 RACGAP1Q9H0H5 632 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 DHX33Q9H6R0 707 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 ZNF624Q9P2J8 865 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TLR6Q9Y2C9 796 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 MTF2Q9Y483 593 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 A0A1B0GVT2 93 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 AGPSO00116 658 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 HNRNPRO43390 633 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 RPLP0P05388 317 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 LAMP2P13473 410 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 CST5P28325 142 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 CRABP2P29373 138 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 UBE2NP61088 152 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 DCTN2Q13561 401 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 EXOC3L2Q2M3D2 409 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM45BPQ6NSW5 357 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NEPROQ6NW34 567 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 WDR59Q6PJI9 974 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 FNDC5Q8NAU1 212 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 FAM45AQ8TCE6 357 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 SLC17A9Q9BYT1 436 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 PTPRHQ9HD43 1115 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TMCO1Q9UM00 188 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NOVA2Q9UNW9 492 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 DGKBQ9Y6T7 804 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 A0A1W2PPC1 479 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 HIDE1A8MVS5 230 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 TMCC2O75069 709 aa9.12□□□□□ -0.95
LIMCH1-202ENST00000381753 NADKO95544 446 aaPredicted RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms