RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 BIRC2Q13490 618 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 POU6F1Q14863 301 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 CYP1B1Q16678 543 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ATP13A5Q4VNC0 1218 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 PYCR3Q53H96 274 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 KCTD16Q68DU8 428 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 CCDC137Q6PK04 289 aaKnown RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 SLC30A9Q6PML9 568 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 DHRS13Q6UX07 377 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 EFL1Q7Z2Z2 1120 aaKnown RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 SLC35F3Q8IY50 421 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 PNPLA1Q8N8W4 532 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 KYQ8NBH2 561 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 WDR48Q8TAF3 677 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 IFI44Q8TCB0 444 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 COG1Q8WTW3 980 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ULK4Q96C45 1275 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 MS4A14Q96JA4 679 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 AP1M1Q9BXS5 423 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 OR2AG1Q9H205 316 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 IL26Q9NPH9 171 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 SIRPGQ9P1W8 387 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 GULP1Q9UBP9 304 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 CRLS1Q9UJA2 301 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 CNOT6Q9ULM6 557 aaKnown RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 SAR1BQ9Y6B6 198 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 OAS3Q9Y6K5 1087 aaKnown RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 KNTC1P50748 2209 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 KIF26BQ2KJY2 2108 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CPED1A4D0V7 1026 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 EME2A4GXA9 379 aaPredicted RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 ZW10O43264 779 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 GRID2O43424 1007 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 BUD23O43709 281 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 DNAJC6O75061 913 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 SRP72O76094 671 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 RALBP11234 206 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 ETS1P14921 441 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 VCLP18206 1134 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 RPL22P35268 128 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 KCNJ1P48048 391 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 SARNPP82979 210 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 CDK16Q00536 496 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CTBSQ01459 385 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CHRNA6Q15825 494 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 INSCQ1MX18 579 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 C14orf28Q4W4Y0 310 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 DENND5AQ6IQ26 1287 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 NYAP1Q6ZVC0 841 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CHST15Q7LFX5 561 aaPredicted RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 LRRTM4Q86VH4 590 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 TMPRSS12Q86WS5 348 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CHCHD4Q8N4Q1 142 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 DDHD1Q8NEL9 900 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 PPHLN1Q8NEY8 458 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 OR52K1Q8NGK4 314 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 ZDHHC1Q8WTX9 485 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 STYXQ8WUJ0 223 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 RUNDC3BQ96NL0 473 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 SCNM1Q9BWG6 230 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 ABCG4Q9H172 646 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 STN1Q9H668 368 aaKnown RBP12.85□□□□□ -0.35
CLK3-224ENST00000568605 ASB8Q9H765 288 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 CAAP1Q9H8G2 361 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 KCND1Q9NSA2 647 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 TAAR2Q9P1P5 351 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 ATXN10Q9UBB4 475 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 FKBPLQ9UIM3 349 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 PADI4Q9UM07 663 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 SLC30A1Q9Y6M5 507 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 BPTFQ12830 3046 aa12.85□□□□□ -0.35
CLK3-224ENST00000568605 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 CFAP99D6REC4 459 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 KMOO15229 486 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 LDB2O43679 373 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 CDK14O94921 469 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ECEL1O95672 775 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 KRT14P02533 472 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ZSCAN5DPP0CG00 497 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ACP5P13686 325 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ZNF8P17098 575 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 TPSB2P20231 275 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 MSH3P20585 1137 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 AK4P27144 223 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 COILP38432 576 aaPredicted RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 PAFAH1B1P43034 410 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 NFATC2Q13469 925 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 PPP1R7Q15435 360 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 TPSAB1Q15661 275 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 SMAD1Q15797 465 aaKnown RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 SKIDA1Q1XH10 827 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 GPR33Q49SQ1 333 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 HES3Q5TGS1 186 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 PAPD7Q5XG87 772 aaKnown RBP12.84□□□□□ -0.35
CLK3-224ENST00000568605 GUSBP11Q6P575 273 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 CRTC3Q6UUV7 619 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 NLRP9Q7RTR0 991 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 TMPRSS7Q7RTY8 843 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 ADGRG6Q86SQ4 1221 aa12.84□□□□□ -0.35
CLK3-224ENST00000568605 TRAPPC5Q8IUR0 188 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 154.2 ms