RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RAD18Q9NS91 495 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 TMEM216Q9P0N5 145 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 SORCS3Q9UPU3 1222 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 PLXNB3Q9ULL4 1909 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 PRMT5O14744 637 aaPredicted RBP18.46■□□□□ 0.55
CLN3-206ENST00000360019 RNASEH2AO75792 299 aaKnown RBP18.46■□□□□ 0.55
CLN3-206ENST00000360019 PKMP14618 531 aaKnown RBP18.46■□□□□ 0.55
CLN3-206ENST00000360019 DLG1Q12959 904 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 SEPT7Q16181 437 aaKnown RBP18.46■□□□□ 0.55
CLN3-206ENST00000360019 EOGTQ5NDL2 527 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 HHATQ5VTY9 493 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 TMEM207Q6UWW9 146 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 ZNF852Q6ZMS4 543 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 Q6ZS52 159 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 TAX1BP1Q86VP1 789 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 RAVER1Q8IY67 606 aaKnown RBP18.46■□□□□ 0.55
CLN3-206ENST00000360019 NRSN1Q8IZ57 195 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 RBFAQ8N0V3 343 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 TRAM1L1Q8N609 369 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 ARMC2Q8NEN0 867 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 KCTD4Q8WVF5 259 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 FAM131CQ96AQ9 280 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 FAM136AQ96C01 138 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 TTC1Q99614 292 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 GPAMQ9HCL2 828 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 MMP17Q9ULZ9 603 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 ANKRD6Q9Y2G4 727 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 ACOT9Q9Y305 439 aa18.46■□□□□ 0.55
CLN3-206ENST00000360019 A6NNZ2 444 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 FADS2P1A8MWK0 482 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 AP1G1O43747 822 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 RECQL5O94762 991 aaPredicted RBP18.45■□□□□ 0.54
CLN3-206ENST00000360019 ESR1P03372 595 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 GSTA1P08263 222 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 C7P10643 843 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 CHRNB1P11230 501 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 ZNF7P17097 686 aaPredicted RBP18.45■□□□□ 0.54
CLN3-206ENST00000360019 PPARGP37231 505 aaPredicted RBP18.45■□□□□ 0.54
CLN3-206ENST00000360019 CREB5Q02930 508 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 TUBB8Q3ZCM7 444 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 HSF5Q4G112 596 aaPredicted RBP18.45■□□□□ 0.54
CLN3-206ENST00000360019 SETMARQ53H47 684 aaPredicted RBP18.45■□□□□ 0.54
CLN3-206ENST00000360019 LYPLAL1Q5VWZ2 237 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 CYP2U1Q7Z449 544 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 SPATA6LQ8N4H0 392 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 CKAP2Q8WWK9 683 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 ZSCAN5AQ9BUG6 496 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 CCDC68Q9H2F9 335 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 SMOXQ9NWM0 555 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 PSD3Q9NYI0 1048 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 PRSS21Q9Y6M0 314 aa18.45■□□□□ 0.54
CLN3-206ENST00000360019 A0A087X1B8 175 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 KRBA1A5PL33 1030 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 PLIN3O60664 434 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 NIPSNAP2O75323 286 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 RHOBTB1O94844 696 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 DNTTP04053 509 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 RPS3P23396 243 aaKnown RBP eCLIP18.44■□□□□ 0.544e-6■■□□□ 12.9
CLN3-206ENST00000360019 B4GALNT1Q00973 533 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 IL9RQ01113 521 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 PRKCQQ04759 706 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 ZNF284Q2VY69 593 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 KYAT3Q6YP21 454 aaKnown RBP18.44■□□□□ 0.54
CLN3-206ENST00000360019 PELI3Q8N2H9 469 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 CLDN19Q8N6F1 224 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 CXorf40AQ8TE69 158 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 ANKRD49Q8WVL7 239 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 ULK4Q96C45 1275 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 AP2M1Q96CW1 435 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 CCDC134Q9H6E4 229 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 FBXL12Q9NXK8 326 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 ZDHHC3Q9NYG2 299 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 GALPQ9UBC7 116 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 IGLV3-16A0A075B6K0 115 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 PROCP04070 461 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 COL6A2P12110 1019 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 TARSP26639 723 aaKnown RBP18.44■□□□□ 0.54
CLN3-206ENST00000360019 IRX4P78413 519 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 ITIH4Q14624 930 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 GPRC6AQ5T6X5 926 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 NUS1Q96E22 293 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 MRGPRX1Q96LB2 322 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 UBXN10Q96LJ8 280 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 GPR78Q96P69 363 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 COPS8Q99627 209 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 CLPBQ9H078 707 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 POPDC3Q9HBV1 291 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 IGSF5Q9NSI5 407 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 TAS2R13Q9NYV9 303 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 PCDHB1Q9Y5F3 818 aa18.44■□□□□ 0.54
CLN3-206ENST00000360019 C19orf67A6NJJ6 358 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 IQCF5A8MTL0 148 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 TSPAN6O43657 245 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 LZTS3O60299 673 aaPredicted RBP18.43■□□□□ 0.54
CLN3-206ENST00000360019 KLHL2O95198 593 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 SOD1P00441 154 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 SERPINB4P48594 390 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 CRY1Q16526 586 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 KCNJ9Q92806 393 aa18.43■□□□□ 0.54
CLN3-206ENST00000360019 NXNL1Q96CM4 212 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms