RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 USP27XA6NNY8 438 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 AURKAO14965 403 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 USP12O75317 370 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 SLC25A14O95258 325 aaPredicted RBP12.89□□□□□ -0.35
CLK3-224ENST00000568605 CEACAM5P06731 702 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 CKMT1AP12532 417 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 HADHAP40939 763 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 GNG11P61952 73 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 CDH17Q12864 832 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 DNAJC3Q13217 504 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 LAMB3Q13751 1172 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 GTF2H3Q13889 308 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 LRP8Q14114 963 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 NR0B2Q15466 257 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 CCDC157Q569K6 752 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 KCTD11Q693B1 232 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 PPP1R21Q6ZMI0 780 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 TRIM74Q86UV6 250 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 GALNT15Q8N3T1 639 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 TTC30BQ8N4P2 665 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 PDCD7Q8N8D1 485 aaKnown RBP12.89□□□□□ -0.35
CLK3-224ENST00000568605 ARL10Q8N8L6 244 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 DTX3LQ8TDB6 740 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 ACTRT1Q8TDG2 376 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 GRK7Q8WTQ7 553 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 GLYATL1Q969I3 302 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 EID2BQ96D98 161 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 AGAP2Q99490 1192 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 BOCQ9BWV1 1114 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 SUDS3Q9H7L9 328 aaPredicted RBP12.89□□□□□ -0.35
CLK3-224ENST00000568605 BPIFA1Q9NP55 256 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 RAB6BQ9NRW1 208 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 APPL1Q9UKG1 709 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 PYCARDQ9ULZ3 195 aa12.89□□□□□ -0.35
CLK3-224ENST00000568605 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.89□□□□□ -0.35
CLK3-224ENST00000568605 AP3B1O00203 1094 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 YY2O15391 372 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 DKK1O94907 266 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 PRAMEF1O95521 474 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 GP1BAP07359 652 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 GIMD1P0DJR0 217 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 BASP1P80723 227 aaKnown RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 SHC2P98077 582 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 E2F1Q01094 437 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 SEMA5AQ13591 1074 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 SPARCL1Q14515 664 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 TCEA2Q15560 299 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 FAM151BQ6UXP7 276 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 MARK2Q7KZI7 788 aaKnown RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 RAB44Q7Z6P3 723 aaPredicted RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 TAB3Q8N5C8 712 aaPredicted RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 DNAAF3Q8N9W5 541 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 OR6C4Q8NGE1 309 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 GDAP1Q8TB36 358 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 SCARF2Q96GP6 870 aaPredicted RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 WDR24Q96S15 920 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 NAPGQ99747 312 aaPredicted RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 CLPBQ9H078 707 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 TMEM168Q9H0V1 697 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 ETNK1Q9HBU6 452 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 EIF2B3Q9NR50 452 aaKnown RBP12.88□□□□□ -0.35
CLK3-224ENST00000568605 TOR4AQ9NXH8 423 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 GPR34Q9UPC5 381 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 GPSM3Q9Y4H4 160 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 ARL5AQ9Y689 179 aa12.88□□□□□ -0.35
CLK3-224ENST00000568605 CTAGE9A4FU28 777 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 VEGFDO43915 354 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 PHF2O75151 1096 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 SUN1O94901 812 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 APRTP07741 180 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 CELA2BP08218 269 aaPredicted RBP12.87□□□□□ -0.35
CLK3-224ENST00000568605 OLIG2Q13516 323 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 SEPT6Q14141 434 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 LDLRAP1Q5SW96 308 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 SLCO6A1Q86UG4 719 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 PRELID2Q8N945 189 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 FAM46DQ8NEK8 389 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 OR4K2Q8NGD2 314 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 GPBAR1Q8TDU6 330 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 MAGOHBQ96A72 148 aaKnown RBP12.87□□□□□ -0.35
CLK3-224ENST00000568605 TTC25Q96NG3 672 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 DPEP2Q9H4A9 486 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 TRIM39Q9HCM9 518 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 SMOXQ9NWM0 555 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 ZNHIT2Q9UHR6 403 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 TMEM98Q9Y2Y6 226 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 NEUROG3Q9Y4Z2 214 aa12.87□□□□□ -0.35
CLK3-224ENST00000568605 HEATR9A2RTY3 570 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 B4DGG1 531 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 HYAL3O43820 417 aaPredicted RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 NUAK1O60285 661 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 SLC2A4P14672 509 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ITGALP20701 1170 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 AKT1P31749 480 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ADCY8P40145 1251 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ACTR1BP42025 376 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 POLD2P49005 469 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 FNTAP49354 379 aa12.86□□□□□ -0.35
CLK3-224ENST00000568605 ZNF140P52738 457 aaPredicted RBP12.86□□□□□ -0.35
CLK3-224ENST00000568605 ACTR1AP61163 376 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms