RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TSTD2Q5T7W7 516 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 OGFOD2Q6N063 350 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 GALNT5Q7Z7M9 940 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 BHMTQ93088 406 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 MYLPFQ96A32 169 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 FBXL8Q96CD0 374 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 HMGXB4Q9UGU5 601 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 NRCAMQ92823 1304 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ARPC2O15144 300 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ADCYAP1R1P41586 468 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 NOVP48745 357 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 IRF8Q02556 426 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 MBTD1Q05BQ5 628 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ISOC1Q96CN7 298 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 BIRC8Q96P09 236 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 SH3PXD2BA1X283 911 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 IMPDH1P20839 514 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 SLC1A2P43004 574 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 GNPDA1P46926 289 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ADAM17P78536 824 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 SLC10A6Q3KNW5 377 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ARMC12Q5T9G4 340 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 ZC3HC1Q86WB0 502 aaKnown RBP19.23■□□□□ 0.67
USP48-201ENST00000308271 TWNKQ96RR1 684 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 LRRC3Q9BY71 257 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 SLC25A51Q9H1U9 297 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 KRCC1Q9NPI7 259 aaPredicted RBP19.23■□□□□ 0.67
USP48-201ENST00000308271 RASSF1Q9NS23 344 aa19.23■□□□□ 0.67
USP48-201ENST00000308271 MATN3O15232 486 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 SLC7A4O43246 635 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 SNNO75324 88 aaPredicted RBP19.22■□□□□ 0.67
USP48-201ENST00000308271 MT-CYBP00156 380 aaPredicted RBP19.22■□□□□ 0.67
USP48-201ENST00000308271 ETV4P43268 484 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 MED22Q15528 200 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 RAP1GAP2Q684P5 730 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 CYS1Q717R9 158 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 PQLC3Q8N755 202 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP19.22■□□□□ 0.67
USP48-201ENST00000308271 TOR1BO14657 336 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 AIREO43918 545 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 MFSD10Q14728 455 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 RAB43Q86YS6 212 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 LRRC58Q96CX6 371 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 HNRNPABQ99729 332 aaKnown RBP19.22■□□□□ 0.67
USP48-201ENST00000308271 SPATA2Q9UM82 520 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 PHF24Q9UPV7 400 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 PEX16Q9Y5Y5 336 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 ZBTB14O43829 449 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 GRK3P35626 688 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 MAGEA8P43361 318 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 TUBA3CQ13748 450 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 CARTPTQ16568 116 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 UTS2BQ765I0 119 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 PTF1AQ7RTS3 328 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 KLHL5Q96PQ7 755 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 CLPXO76031 633 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 CAMK2GQ13555 558 aaPredicted RBP19.22■□□□□ 0.67
USP48-201ENST00000308271 CENPSQ8N2Z9 138 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 FEM1CQ96JP0 617 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 BCO2Q9BYV7 579 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 AGO3Q9H9G7 860 aaKnown RBP19.22■□□□□ 0.67
USP48-201ENST00000308271 USP29Q9HBJ7 922 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 ZDHHC7Q9NXF8 308 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 AHSPQ9NZD4 102 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 MFHAS1Q9Y4C4 1052 aa19.22■□□□□ 0.67
USP48-201ENST00000308271 SUV39H1O43463 412 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 SERPINA1P01009 418 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 ALDOAP04075 364 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 PKMP14618 531 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 PPIBP23284 216 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 CRATP43155 626 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 FOXM1Q08050 763 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 BOP1Q14137 746 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 GANCQ8TET4 914 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 PCDH12Q9NPG4 1184 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 PDP1Q9P0J1 537 aaPredicted RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 PSAT1Q9Y617 370 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 ST8SIA6P61647 398 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 ZNF284Q2VY69 593 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 EPHX4Q8IUS5 362 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 TBATAQ96M53 351 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 NXF3Q9H4D5 531 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 MAGEE1Q9HCI5 957 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 SMIM28A0A1B0GU29 152 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 ZNF487B1APH4 448 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 WBP4O75554 376 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 MTHFD1P11586 935 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 CDH1P12830 882 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 PROZP22891 400 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 NRG1Q02297 640 aaPredicted RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 SLC39A12Q504Y0 691 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 MZT2AQ6P582 158 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 REPS1Q96D71 796 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 GLT1D1Q96MS3 346 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 SSR3Q9UNL2 185 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 SETD1AO15047 1707 aaKnown RBP19.21■□□□□ 0.67
USP48-201ENST00000308271 TIAM2Q8IVF5 1701 aa19.21■□□□□ 0.67
USP48-201ENST00000308271 TMEM233B4DJY2 109 aa19.2■□□□□ 0.66
USP48-201ENST00000308271 TYMPP19971 482 aa19.2■□□□□ 0.66
USP48-201ENST00000308271 GSTM5P46439 218 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms