RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 PNPOQ9NVS9 261 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 XPR1Q9UBH6 696 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 F5P12259 2224 aa22.57■■□□□ 1.2
CDX1-201ENST00000231656 TBC1D3BA6NDS4 549 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 WISP3O95389 354 aaPredicted RBP22.56■■□□□ 1.2
CDX1-201ENST00000231656 ALOX15P16050 662 aaPredicted RBP22.56■■□□□ 1.2
CDX1-201ENST00000231656 MAPK8P45983 427 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 PRKAA2P54646 552 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 ILF2Q12905 390 aaKnown RBP22.56■■□□□ 1.2
CDX1-201ENST00000231656 SEMA3AQ14563 771 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 CYB5D1Q6P9G0 228 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 Q6ZVU0 165 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 TTC7BQ86TV6 843 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 SLC44A3Q8N4M1 653 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 LPCAT1Q8NF37 534 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 MDGA1Q8NFP4 955 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 FRS2Q8WU20 508 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 SLC7A6OSQ96CW6 309 aaPredicted RBP22.56■■□□□ 1.2
CDX1-201ENST00000231656 CDKN2AIPNLQ96HQ2 116 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 SMIM14Q96QK8 99 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 NMUR2Q9GZQ4 415 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 PLA2G4CQ9UP65 541 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 COL6A3P12111 3177 aa22.56■■□□□ 1.2
CDX1-201ENST00000231656 TTC34A8MYJ7 566 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 BNIP3LO60238 219 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 GKP32189 559 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 KRT72Q14CN4 511 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 CARD16Q5EG05 197 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 LIPMQ5VYY2 423 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 PTCRAQ6ISU1 281 aaPredicted RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 MRNIPQ6NTE8 343 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 MAVSQ7Z434 540 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 RYBPQ8N488 228 aaPredicted RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 SPATA6LQ8N4H0 392 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 OR4L1Q8NH43 312 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 HEXDCQ8WVB3 486 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 INPP5DQ92835 1189 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 TMEM237Q96Q45 408 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 EBF4Q9BQW3 602 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 STN1Q9H668 368 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 CATSPERZQ9NTU4 200 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 ARL8BQ9NVJ2 186 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 VWA7Q9Y334 891 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 COL4A2P08572 1712 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 MUC22E2RYF6 1773 aaPredicted RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 ZNF195O14628 629 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 KAT7O95251 611 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 OGNP20774 298 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 ST8SIA6P61647 398 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 TUBB3Q13509 450 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 MYLK3Q32MK0 819 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 PREPLQ4J6C6 727 aaPredicted RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 DPY19L3Q6ZPD9 716 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 GLT6D1Q7Z4J2 308 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 CAMK1DQ8IU85 385 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 PLPP6Q8IY26 295 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 PDCD6IPQ8WUM4 868 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 VOPP1Q96AW1 172 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 PTCD3Q96EY7 689 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 MRPL57Q9BQC6 102 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 ADGRE3Q9BY15 652 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 MRPL46Q9H2W6 279 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 FBRSL1Q9HCM7 1045 aaKnown RBP22.55■■□□□ 1.2
CDX1-201ENST00000231656 LNPEPQ9UIQ6 1025 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 SLC8A2Q9UPR5 921 aa22.55■■□□□ 1.2
CDX1-201ENST00000231656 ANKRD66B4E2M5 251 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 TRAFD1O14545 582 aaPredicted RBP22.54■■□□□ 1.2
CDX1-201ENST00000231656 PIGNO95427 931 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 KRT16P08779 473 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 GRIA2P42262 883 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 CCNHP51946 323 aaPredicted RBP22.54■■□□□ 1.2
CDX1-201ENST00000231656 KPNA2P52292 529 aaKnown RBP22.54■■□□□ 1.2
CDX1-201ENST00000231656 CDKN2DP55273 166 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 BCL2L1Q07817 233 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 TYSND1Q2T9J0 566 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 ZNF549Q6P9A3 640 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 SPNS2Q8IVW8 549 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 OR2A12Q8NGT7 310 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 UBXN10Q96LJ8 280 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 ATP13A3Q9H7F0 1226 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 TRPV5Q9NQA5 729 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 KLC4Q9NSK0 619 aa22.54■■□□□ 1.2
CDX1-201ENST00000231656 CORO1CQ9ULV4 474 aaPredicted RBP22.54■■□□□ 1.2
CDX1-201ENST00000231656 FZD6O60353 706 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 DLX3O60479 287 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 HNRNPCL1O60812 293 aaKnown RBP22.53■■□□□ 1.2
CDX1-201ENST00000231656 HSPA4LO95757 839 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 ASGR2P07307 311 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 FAM45BPQ6NSW5 357 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 OR4K2Q8NGD2 314 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 FAM45AQ8TCE6 357 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 TUBB6Q9BUF5 446 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 DRC3Q9H069 523 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 DNAJC28Q9NX36 388 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 C2orf81A6NN90 581 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 MGRN1O60291 552 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 POP4O95707 220 aaKnown RBP22.53■■□□□ 1.2
CDX1-201ENST00000231656 APODP05090 189 aa22.53■■□□□ 1.2
CDX1-201ENST00000231656 GRIA4P48058 902 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms