RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PDK1Q15118 436 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 ODF2Q5BJF6 829 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 SLC9A4Q6AI14 798 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 KCNE4Q8WWG9 221 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 TMEM159Q96B96 161 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 PRR11Q96HE9 360 aaPredicted RBP19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 ADGRE3Q9BY15 652 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 ABCG8Q9H221 673 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 DDX56Q9NY93 547 aaKnown RBP19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 GOLGA6AQ9NYA3 693 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 LRIT1Q9P2V4 623 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 SUFUQ9UMX1 484 aa19.01■□□□□ 0.63
CCDC28A-203ENST00000617445 A0A1W2PNU3 283 aaPredicted RBP19■□□□□ 0.63
CCDC28A-203ENST00000617445 A0A1W2PQM1 296 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 RGSL1A5PLK6 1076 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 CDRT15L2A8MXV6 281 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 B4DGG1 531 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 AKR1B15C9JRZ8 316 aaPredicted RBP19■□□□□ 0.63
CCDC28A-203ENST00000617445 JCHAINP01591 159 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 ITGA2BP08514 1039 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 INHBCP55103 352 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 SKOR1P84550 965 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 NIPAL4Q0D2K0 466 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 CLPPQ16740 277 aaPredicted RBP19■□□□□ 0.63
CCDC28A-203ENST00000617445 CLEC14AQ86T13 490 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 C17orf82Q86X59 251 aaPredicted RBP19■□□□□ 0.63
CCDC28A-203ENST00000617445 PLD5Q8N7P1 536 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 LSM14AQ8ND56 463 aaKnown RBP19■□□□□ 0.63
CCDC28A-203ENST00000617445 CCL4L1Q8NHW4 92 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 SPTLC3Q9NUV7 552 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 AHCTF1Q8WYP5 2266 aa19■□□□□ 0.63
CCDC28A-203ENST00000617445 TEX51A0A1B0GUA7 166 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 C3orf70A6NLC5 250 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 ANKRD66B4E2M5 251 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 APOL1O14791 398 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 PLD2O14939 933 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 PPP1R12AO14974 1030 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 SOD1P00441 154 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 FUCA1P04066 466 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 HOXB3P14651 431 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 GNPDA1P46926 289 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 IHHQ14623 411 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 PTPRRQ15256 657 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 BZW1Q7L1Q6 419 aaKnown RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 GPR155Q7Z3F1 870 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 SPRED1Q7Z699 444 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 NRROSQ86YC3 692 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 RHOT1Q8IXI2 618 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 FBXO39Q8N4B4 442 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 EXD1Q8NHP7 514 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 CCHCR1Q8TD31 782 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 ZDHHC1Q8WTX9 485 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 CRELD1Q96HD1 420 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 FCRL3Q96P31 734 aaPredicted RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 CDH19Q9H159 772 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 SPATS2LQ9NUQ6 558 aaKnown RBP18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 TAAR2Q9P1P5 351 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 HEY1Q9Y5J3 304 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 RNF215Q9Y6U7 377 aa18.99■□□□□ 0.63
CCDC28A-203ENST00000617445 EIF4E1BA6NMX2 242 aaKnown RBP18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 TK2O00142 265 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 KCNK1O00180 336 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 TNFSF15O95150 251 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 FGF1P05230 155 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 ADCY8P40145 1251 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 GPR3P46089 330 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 TMPRSS3P57727 454 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 CTBSQ01459 385 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 TBX2Q13207 712 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 LRP8Q14114 963 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 RAB11FIP2Q7L804 512 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 ZNF438Q7Z4V0 828 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 Q8N9G6 341 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 RNF214Q8ND24 703 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 LPCAT1Q8NF37 534 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 SCAMP4Q969E2 229 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 MLPHQ9BV36 600 aaPredicted RBP18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 EPB41L5Q9HCM4 733 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 CD84Q9UIB8 345 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 PCDHGA7Q9Y5G6 932 aa18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 ZFC3H1O60293 1989 aaKnown RBP18.98■□□□□ 0.63
CCDC28A-203ENST00000617445 C1orf232A0A0U1RR37 186 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 RHPN2P1A8MT19 583 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 CLDN7O95471 211 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 MMP2P08253 660 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 CD86P42081 329 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 NR2C2P49116 596 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 HADHBP55084 474 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 ZFP36L1Q07352 338 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 AP1B1Q10567 949 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 NR1D2Q14995 579 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 SLC14A2Q15849 920 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 QPCTQ16769 361 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 FOXR1Q6PIV2 292 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 SARM1Q6SZW1 724 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 B3GNT8Q7Z7M8 397 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 CNTD1Q8N815 330 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 NAF1Q96HR8 494 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 COX14Q96I36 57 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms