RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TPM2P07951 284 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 SLC2A4P14672 509 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 GM2AP17900 193 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 SOX5P35711 763 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 HSPA9P38646 679 aaKnown RBP16.85■□□□□ 0.29
VPS29-204ENST00000548259 ETV3P41162 512 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 GPR1P46091 355 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 IL10RBQ08334 325 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 MAP7Q14244 749 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 BECN1Q14457 450 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 ZNF235Q14590 738 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 FHL5Q5TD97 284 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 DOK6Q6PKX4 331 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 GALNT13Q8IUC8 556 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 CCDC13Q8IYE1 715 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 NDUFAF2Q8N183 169 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 PELI3Q8N2H9 469 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 NCSTNQ92542 709 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 PSKH2Q96QS6 385 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 SPRY4Q9C004 299 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 SLC39A8Q9C0K1 460 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 EPB41L1Q9H4G0 881 aa16.85■□□□□ 0.29
VPS29-204ENST00000548259 PLEKHB1Q9UF11 243 aaPredicted RBP16.85■□□□□ 0.29
VPS29-204ENST00000548259 ZFC3H1O60293 1989 aaKnown RBP16.85■□□□□ 0.29
VPS29-204ENST00000548259 SPTBN1Q01082 2364 aaKnown RBP16.85■□□□□ 0.29
VPS29-204ENST00000548259 LRRK1Q38SD2 2015 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 FUCA1P04066 466 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 KRT7P08729 469 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 UNGP13051 313 aaPredicted RBP16.84■□□□□ 0.29
VPS29-204ENST00000548259 STAT5AP42229 794 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 POLD2P49005 469 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 HHEXQ03014 270 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 CAMK4Q16566 473 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 ASB18Q6ZVZ8 466 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 USP45Q70EL2 814 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 ARHGAP22Q7Z5H3 698 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 PHF13Q86YI8 300 aaPredicted RBP16.84■□□□□ 0.29
VPS29-204ENST00000548259 AVL9Q8NBF6 648 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 ZNF599Q96NL3 588 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 MCEEQ96PE7 176 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.84■□□□□ 0.29
VPS29-204ENST00000548259 SEPT11Q9NVA2 429 aaKnown RBP16.84■□□□□ 0.29
VPS29-204ENST00000548259 PHTF1Q9UMS5 762 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 AP4E1Q9UPM8 1137 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 POLHQ9Y253 713 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 KCNMB2Q9Y691 235 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 RPS6KL1Q9Y6S9 549 aa16.84■□□□□ 0.29
VPS29-204ENST00000548259 UNC79Q9P2D8 2635 aa16.83■□□□□ 0.29
VPS29-204ENST00000548259 CHRNB2P17787 502 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 ZNF135P52742 658 aaPredicted RBP16.83■□□□□ 0.28
VPS29-204ENST00000548259 EPHA4P54764 986 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 DPTQ07507 201 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 PTP4A2Q12974 167 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 LBRQ14739 615 aaKnown RBP16.83■□□□□ 0.28
VPS29-204ENST00000548259 CLEC16AQ2KHT3 1053 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 HSP90AA4PQ58FG1 418 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 PLXDC1Q8IUK5 500 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 SFRP1Q8N474 314 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 SLC37A2Q8TED4 501 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 SCARF2Q96GP6 870 aaPredicted RBP16.83■□□□□ 0.28
VPS29-204ENST00000548259 VPS16Q9H269 839 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 DHX35Q9H5Z1 703 aaKnown RBP16.83■□□□□ 0.28
VPS29-204ENST00000548259 KCND3Q9UK17 655 aa16.83■□□□□ 0.28
VPS29-204ENST00000548259 HTRA2O43464 458 aaPredicted RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 RFPL1O75677 317 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 MAP3K6O95382 1288 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 EEF1GP26641 437 aaKnown RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 MLLT10P55197 1068 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 POLR2FP61218 127 aaKnown RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 ADAMTSL4Q6UY14 1074 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 Q6ZVL8 140 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 TIPARPQ7Z3E1 657 aaKnown RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 HSD11B1LQ7Z5J1 315 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 SLC9B2Q86UD5 537 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 ZNF761Q86XN6 746 aaPredicted RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 GALNT11Q8NCW6 608 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 NSMCE1Q8WV22 266 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 SCRN2Q96FV2 425 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 ULBP3Q9BZM4 244 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 SARS2Q9NP81 518 aaKnown RBP16.82■□□□□ 0.28
VPS29-204ENST00000548259 PCDHGC4Q9Y5F7 938 aa16.82■□□□□ 0.28
VPS29-204ENST00000548259 TRBV23OR9-2A0A075B6M9 112 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 TTLL8A6PVC2 850 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 GADD45BO75293 160 aaPredicted RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 DLGAP3O95886 979 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 DLSTP36957 453 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 MAPK9P45984 424 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 NFATC2Q13469 925 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 PYCR3Q53H96 274 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 RALGPS1Q5JS13 557 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 FKBP15Q5T1M5 1219 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 CYB5D1Q6P9G0 228 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 C6orf15Q6UXA7 325 aaPredicted RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 RFX8Q6ZV50 586 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 MARK2Q7KZI7 788 aaKnown RBP16.81■□□□□ 0.28
VPS29-204ENST00000548259 AP2M1Q96CW1 435 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 NUDCD1Q96RS6 583 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 HERPUD2Q9BSE4 406 aa16.81■□□□□ 0.28
VPS29-204ENST00000548259 FAM207AQ9NSI2 230 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms