RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 CD58P19256 250 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 HOXC9P31274 260 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 EIF2S3P41091 472 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 MSH2P43246 934 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 SELENOVP59797 346 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 PPARDQ03181 441 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 ALCAMQ13740 583 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 EIF2S3LQ2VIR3 472 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 ZNF284Q2VY69 593 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 DCAF6Q58WW2 860 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 SLC18B1Q6NT16 456 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 RD3Q7Z3Z2 195 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 YTHDF3Q7Z739 585 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 MCEMP1Q8IX19 187 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 SPATA6LQ8N4H0 392 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 TMEM163Q8TC26 289 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 GFM1Q96RP9 751 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 ST6GALNAC4Q9H4F1 302 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 CLK4Q9HAZ1 481 aaKnown RBP7.44□□□□□ -1.22
NUP54-215ENST00000514313 FLRT1Q9NZU1 646 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 SLC9A2Q9UBY0 812 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 ZNF148Q9UQR1 794 aa7.44□□□□□ -1.22
NUP54-215ENST00000514313 GAGE12JA6NER3 117 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 BCL10O95999 233 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 KLKB1P03952 638 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 G6PDP11413 515 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 MAOAP21397 527 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 BUD31P41223 144 aaPredicted RBP7.43□□□□□ -1.22
NUP54-215ENST00000514313 METAP2P50579 478 aaKnown RBP eCLIP7.43□□□□□ -1.22
NUP54-215ENST00000514313 P2RX3P56373 397 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 KRT83P78385 493 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SPOCK1Q08629 439 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SREBF2Q12772 1141 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 GRSF1Q12849 480 aaKnown RBP eCLIP7.43□□□□□ -1.22
NUP54-215ENST00000514313 CAMK2DQ13557 499 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 CRY2Q49AN0 593 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 ZNF805Q5CZA5 627 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 NUGGCQ68CJ6 796 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SLC16A12Q6ZSM3 486 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 EPHX4Q8IUS5 362 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 GUF1Q8N442 669 aaKnown RBP7.43□□□□□ -1.22
NUP54-215ENST00000514313 GSDMBQ8TAX9 411 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 ATP6V1E2Q96A05 226 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 NUDCD1Q96RS6 583 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SEMA4CQ9C0C4 833 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SCAND2PQ9GZW5 306 aaPredicted RBP7.43□□□□□ -1.22
NUP54-215ENST00000514313 PCED1AQ9H1Q7 454 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 KCNN2Q9H2S1 579 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 OPA3Q9H6K4 179 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 RIOX1Q9H6W3 641 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 DNAJC18Q9H819 358 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 ZWILCHQ9H900 591 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 EPB41L5Q9HCM4 733 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 TMEM51Q9NW97 253 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 SELENONQ9NZV5 590 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 RCOR1Q9UKL0 485 aa7.43□□□□□ -1.22
NUP54-215ENST00000514313 KCNU1A8MYU2 1149 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 KDM4EB2RXH2 506 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 UBA1P22314 1058 aaKnown RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 CTNNA1P35221 906 aaKnown RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 MMP14P50281 582 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 ZXDAP98168 799 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 NEDD9Q14511 834 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 COG2Q14746 738 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 LETM2Q2VYF4 491 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 Q5PR19 223 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 GGNBP1Q5YKI7 109 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 SIGIRRQ6IA17 410 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 METTL2BQ6P1Q9 378 aaKnown RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 TAOK1Q7L7X3 1001 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 PALB2Q86YC2 1186 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 THNSL1Q8IYQ7 743 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 DDB2Q92466 427 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 LPGAT1Q92604 370 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 METTL2AQ96IZ6 378 aaKnown RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 APOLD1Q96LR9 279 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 CDRT15Q96T59 188 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 PRSS22Q9GZN4 317 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 RSPH9Q9H1X1 276 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 DENND2DQ9H6A0 471 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 ACSS1Q9NUB1 689 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 CRNNQ9UBG3 495 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 DNAJB4Q9UDY4 337 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 NCANO14594 1321 aa7.42□□□□□ -1.22
NUP54-215ENST00000514313 SOS1Q07889 1333 aaPredicted RBP7.42□□□□□ -1.22
NUP54-215ENST00000514313 TCRBV21S2A2A0A5A6 115 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 PRRG2O14669 202 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 SMAD9O15198 467 aaKnown RBP7.41□□□□□ -1.22
NUP54-215ENST00000514313 DIAPH2O60879 1101 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 ZC3H11AO75152 810 aaKnown RBP eCLIP7.41□□□□□ -1.222e-6■■■■□ 20.6
NUP54-215ENST00000514313 RSL1D1O76021 490 aaKnown RBP7.41□□□□□ -1.22
NUP54-215ENST00000514313 NUDT3O95989 172 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 SCG2P13521 617 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 PRLRP16471 622 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 GPTP24298 496 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 MC5RP33032 325 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 GDF5P43026 501 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 CCR3P51677 355 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 MYBPC2Q14324 1141 aa7.41□□□□□ -1.22
NUP54-215ENST00000514313 Q4G0T1 1027 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms