RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SNX15Q9NRS6 342 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 PCMTD2Q9NV79 361 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 ITM2BQ9Y287 266 aa18.56■□□□□ 0.56
CLN3-206ENST00000360019 ZNF106Q9H2Y7 1883 aaKnown RBP18.55■□□□□ 0.56
CLN3-206ENST00000360019 FAM47DPA6NHR8 397 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 PLK4O00444 970 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 PRAMEF1O95521 474 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 GLULP15104 373 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 ZNF30P17039 623 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 NTSR1P30989 418 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 RPA3P35244 121 aaPredicted RBP18.55■□□□□ 0.56
CLN3-206ENST00000360019 SERPINB8P50452 374 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 GUCY1A3Q02108 690 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 ARHGEF7Q14155 803 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 ZRANB3Q5FWF4 1079 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 TTC19Q6DKK2 380 aaPredicted RBP18.55■□□□□ 0.56
CLN3-206ENST00000360019 SDCCAG8Q86SQ7 713 aaPredicted RBP18.55■□□□□ 0.56
CLN3-206ENST00000360019 ANKRD42Q8N9B4 389 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 KCNV2Q8TDN2 545 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 PPP1R16AQ96I34 528 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 APOPT1Q96IL0 206 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 RSPH9Q9H1X1 276 aaPredicted RBP18.55■□□□□ 0.56
CLN3-206ENST00000360019 SLC39A10Q9ULF5 831 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 FAM50BQ9Y247 325 aa18.55■□□□□ 0.56
CLN3-206ENST00000360019 FAM95CA0A1B0GW59 222 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 GOLGA8CPA6NN73 597 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 C1QTNF3-AMACRE9PGA6 284 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 ADAM23O75077 832 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 SRP72O76094 671 aaKnown RBP18.54■□□□□ 0.56
CLN3-206ENST00000360019 NFKBIAP25963 317 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 TYK2P29597 1187 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 SPAM1P38567 509 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 MDH1P40925 334 aaKnown RBP18.54■□□□□ 0.56
CLN3-206ENST00000360019 CSRP3P50461 194 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 PGGT1BP53609 377 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 PDE1CQ14123 709 aaPredicted RBP18.54■□□□□ 0.56
CLN3-206ENST00000360019 SLC44A4Q53GD3 710 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 PPM1JQ5JR12 505 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 RBM20Q5T481 1227 aaKnown RBP18.54■□□□□ 0.56
CLN3-206ENST00000360019 KIAA1211LQ6NV74 962 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 ERAP2Q6P179 960 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 CDHR3Q6ZTQ4 885 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 SLC41A1Q8IVJ1 513 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 MGARPQ8TDB4 240 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 ACMSDQ8TDX5 336 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 DENND1AQ8TEH3 1009 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 NDNQ99608 321 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 SLC13A1Q9BZW2 595 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 C12orf65Q9H3J6 166 aaKnown RBP18.54■□□□□ 0.56
CLN3-206ENST00000360019 MLXIPLQ9NP71 852 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 CRYL1Q9Y2S2 319 aa18.54■□□□□ 0.56
CLN3-206ENST00000360019 GLYATL1P3A0A0U1RQE8 302 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SYNCRIPO60506 623 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 TOP3BO95985 862 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 ADRB3P13945 408 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CD72P21854 359 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 PMLP29590 882 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CA5AP35218 305 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 GMPRP36959 345 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SPINT3P49223 89 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 NEK3P51956 506 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SLC18A1P54219 525 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SATB1Q01826 763 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CACNG1Q06432 222 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 FBXL19Q6PCT2 694 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 HSD11B1LQ7Z5J1 315 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CACUL1Q86Y37 369 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 GPATCH11Q8N954 259 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 TXNDC5Q8NBS9 432 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 TCP10LQ8TDR4 215 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SCG3Q8WXD2 468 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 MSANTD3Q96H12 275 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 OMDQ99983 421 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 INTS10Q9NVR2 710 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 MKS1Q9NXB0 559 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 APPL1Q9UKG1 709 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 SLC30A1Q9Y6M5 507 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 COPEO14579 308 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 AREL1O15033 823 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 KLF8O95600 359 aaPredicted RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 SAT1P21673 171 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CLCN5P51795 746 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 COPAP53621 1224 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 NFATC2Q13469 925 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CCINQ13939 588 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 USP10Q14694 798 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 LRRC14Q15048 493 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 CST6Q15828 149 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 ZNF549Q6P9A3 640 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 ERN2Q76MJ5 926 aaKnown RBP18.53■□□□□ 0.56
CLN3-206ENST00000360019 FAM3CQ92520 227 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 LPGAT1Q92604 370 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 ELMO2Q96JJ3 720 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 TCF12Q99081 682 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 DYRK4Q9NR20 520 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 DUSP12Q9UNI6 340 aa18.53■□□□□ 0.56
CLN3-206ENST00000360019 A0A1W2PQF6 199 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 DRD3P35462 400 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 P2RY2P41231 377 aa18.52■□□□□ 0.56
CLN3-206ENST00000360019 WDR4P57081 412 aaKnown RBP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms