RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 DPYSL3Q14195 570 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 RFTN1Q14699 578 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 TCEA2Q15560 299 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 ATP13A4Q4VNC1 1196 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 TMCO4Q5TGY1 634 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 LRRC49Q8IUZ0 686 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 RHOT1Q8IXI2 618 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 TSEN2Q8NCE0 465 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 OR1E3Q8WZA6 343 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 FUBP1Q96AE4 644 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 FGF22Q9HCT0 170 aa17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 DDX56Q9NY93 547 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-203ENST00000594298 RP1P56715 2156 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ASH1LQ9NR48 2969 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 PALMO75781 387 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 PRKCGP05129 697 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 JMJD7P0C870 316 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 KDELR1P24390 212 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 IL4RP24394 825 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ARSEP51690 589 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 POLR2LP62875 67 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 HLTFQ14527 1009 aaKnown RBP eCLIP17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ANKRD20A8PQ5CZ79 823 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 XKR5Q6UX68 686 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 LIPIQ6XZB0 460 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ARHGAP12Q8IWW6 846 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 NSMCE1Q8WV22 266 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 SPOCK2Q92563 424 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ZNF599Q96NL3 588 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 MAK16Q9BXY0 300 aaKnown RBP17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 LOXL2Q9Y4K0 774 aa17.57■□□□□ 0.4
SHKBP1-203ENST00000594298 ZNF487B1APH4 448 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 TRAFD1O14545 582 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 NUDT21O43809 227 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 ELFN1P0C7U0 828 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 LIPCP11150 499 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 HGFP14210 728 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 GM2AP17900 193 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 COMTP21964 271 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 RENBPP51606 427 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 NAP1L1P55209 391 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 BCL2L1Q07817 233 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 C14orf28Q4W4Y0 310 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 RAD9BQ6WBX8 426 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 DPPA4Q7L190 304 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 SPRED1Q7Z699 444 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 TAF8Q7Z7C8 310 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 KIAA1328Q86T90 577 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 VSIG1Q86XK7 387 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 CPNE8Q86YQ8 564 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 JAMLQ86YT9 394 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 BBS5Q8N3I7 341 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 NPWQ8N729 165 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 FAM46DQ8NEK8 389 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 CINPQ9BW66 212 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 MRPL40Q9NQ50 206 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 ETNK2Q9NVF9 386 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 PISDQ9UG56 409 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 ALG6Q9Y672 507 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 RNF215Q9Y6U7 377 aa17.56■□□□□ 0.4
SHKBP1-203ENST00000594298 LRP4O75096 1905 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 LRRD1A4D1F6 860 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 BTNL10A8MVZ5 291 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 ITGB2P05107 769 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 CD48P09326 243 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 VAV2P52735 878 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 AP1S1P61966 158 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 MMRN1Q13201 1228 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 IFI16Q16666 785 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 PNCKQ6P2M8 343 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 SLITRK4Q8IW52 837 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 ATPAF2Q8N5M1 289 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 Q8N9G6 341 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 FAF2Q96CS3 445 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 SGF29Q96ES7 293 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 PSKH2Q96QS6 385 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 CMKLR1Q99788 373 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 B3GNT4Q9C0J1 378 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 TMEM168Q9H0V1 697 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 WDR26Q9H7D7 661 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 LRIT1Q9P2V4 623 aa17.55■□□□□ 0.4
SHKBP1-203ENST00000594298 PDE2AO00408 941 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 PJA2O43164 708 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 PSTPIP1O43586 416 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 ZFXP17010 805 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 KIF5AQ12840 1032 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 PAFAH1B3Q15102 231 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 TGIF1Q15583 401 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 LINC00303Q3SY05 128 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 C11orf63Q6NUN7 778 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 USP53Q70EK8 1073 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 DAAM2Q86T65 1068 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 C17orf82Q86X59 251 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 EXD3Q8N9H8 876 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 KIAA1524Q8TCG1 905 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 RAPGEF5Q92565 580 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 RNF157Q96PX1 679 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 LGR4Q9BXB1 951 aa17.54■□□□□ 0.4
SHKBP1-203ENST00000594298 DPEP2Q9H4A9 486 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms