RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ALG1LQ6GMV1 187 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 OR1E3Q8WZA6 343 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 FAF2Q96CS3 445 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 DTD2Q96FN9 168 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 PDXPQ96GD0 296 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 SEMA3CQ99985 751 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 CCDC3Q9BQI4 270 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 NT5MQ9NPB1 228 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 PHPT1Q9NRX4 125 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 DNPEPQ9ULA0 475 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 ZNF487B1APH4 448 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 TMX2-CTNND1H3BSU7 103 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 MFSD11O43934 449 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 MPOP05164 745 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 MYCLP1P12525 358 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 CA4P22748 312 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 ARHGAP25P42331 645 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 MLLT3P42568 568 aaPredicted RBP19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 ITKQ08881 620 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 SPIDRQ14159 915 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 ATP13A4Q4VNC1 1196 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 OGFOD3Q6PK18 319 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 VSIG1Q86XK7 387 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 RAVER1Q8IY67 606 aaKnown RBP19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 PIH1D2Q8WWB5 315 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 TEX101Q9BY14 249 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 FGF22Q9HCT0 170 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 PCDHGA8Q9Y5G5 932 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 RAI2Q9Y5P3 530 aa19.08■□□□□ 0.64
CCDC28A-203ENST00000617445 NTN3O00634 580 aaPredicted RBP19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 FZD6O60353 706 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 PNLIPP16233 465 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 ZNF30P17039 623 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 PCBP4P57723 403 aaKnown RBP19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 DPTQ07507 201 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 ZFYVE27Q5T4F4 411 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 TAF8Q7Z7C8 310 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 NLRP8Q86W28 1048 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 VSTM4Q8IW00 320 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 KYQ8NBH2 561 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 ZNF248Q8NDW4 579 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 GPR156Q8NFN8 814 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC42Q96M95 316 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 ANP32EQ9BTT0 268 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 PACSIN1Q9BY11 444 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 TSPY26PQ9H489 355 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 CYP4F12Q9HCS2 524 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 THSD1Q9NS62 852 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 RBM22Q9NW64 420 aaKnown RBP eCLIP19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 SIRPGQ9P1W8 387 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 ENTPD2Q9Y5L3 495 aa19.07■□□□□ 0.64
CCDC28A-203ENST00000617445 KIF26BQ2KJY2 2108 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 COL27A1Q8IZC6 1860 aaPredicted RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 PRSS38A1L453 326 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 NPIPB15A6NHN6 443 aaPredicted RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 PYGLP06737 847 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 CCNB1P14635 433 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 GLB1P16278 677 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 KDELR1P24390 212 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 RBMS1P29558 406 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 GJC1P36383 396 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 TAS2R40P59535 323 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 RPL26P61254 145 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 PEX6Q13608 980 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 HSD11B1LQ7Z5J1 315 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 RHOT2Q8IXI1 618 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 FAM46DQ8NEK8 389 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 SLC35G2Q8TBE7 412 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 HDAC11Q96DB2 347 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 HIC2Q96JB3 615 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 ZNF830Q96NB3 372 aaPredicted RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 LGR4Q9BXB1 951 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 ABHD10Q9NUJ1 306 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 APPL1Q9UKG1 709 aa19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 RPL26L1Q9UNX3 145 aaKnown RBP19.06■□□□□ 0.64
CCDC28A-203ENST00000617445 MTA2O94776 668 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 LHCGRP22888 699 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 ITPKBP27987 946 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 ETV3P41162 512 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 EPHB1P54762 984 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 DENND2CQ68D51 928 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 CRTC1Q6UUV9 634 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 Q6ZVL8 140 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 TECPR1Q7Z6L1 1165 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 HEATR4Q86WZ0 1026 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 PQLC3Q8N755 202 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 WDR36Q8NI36 951 aaKnown RBP19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 KIAA1524Q8TCG1 905 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 CCDC74AQ96AQ1 378 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 ATXN7L3BQ96GX2 97 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 SLC46A1Q96NT5 459 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 RNF157Q96PX1 679 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 TMEM168Q9H0V1 697 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 MRPL40Q9NQ50 206 aaKnown RBP19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 TRNAU1APQ9NX07 287 aaKnown RBP19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 MOSPD1Q9UJG1 213 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 INTUQ9ULD6 942 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 SATB2Q9UPW6 733 aa19.05■□□□□ 0.64
CCDC28A-203ENST00000617445 FASNP49327 2511 aaKnown RBP19.04■□□□□ 0.64
CCDC28A-203ENST00000617445 A0A0J9YYE9 177 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms