RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CLEC4CQ8WTT0 213 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 PPP1R10Q96QC0 940 aaKnown RBP10.46□□□□□ -0.74
LIG1-220ENST00000601091 ACAT2Q9BWD1 397 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 ATXN3LQ9H3M9 355 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 OSGEPL1Q9H4B0 414 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 WDR41Q9HAD4 459 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 ACSS2Q9NR19 701 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 DNAJC28Q9NX36 388 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 SIRPGQ9P1W8 387 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 TBC1D14Q9P2M4 693 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 PCDHGA2Q9Y5H1 932 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 NUMBLQ9Y6R0 609 aa10.46□□□□□ -0.74
LIG1-220ENST00000601091 FAM95CA0A1B0GW59 222 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 AXIN1O15169 862 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 GSTA4O15217 222 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 SLC2A3P11169 496 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 VAV1P15498 845 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 GNAZP19086 355 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ALDH1A3P47895 512 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 AIF1P55008 147 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 MFSD10Q14728 455 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 TEX44Q53QW1 395 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 VWA5B1Q5TIE3 1220 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 CDHR3Q6ZTQ4 885 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 FBXW8Q8N3Y1 598 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 OR8K3Q8NH51 312 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RDH11Q8TC12 318 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PPP1R13LQ8WUF5 828 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PHF21BQ96EK2 531 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 BARD1Q99728 777 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 TBL1YQ9BQ87 522 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 TINF2Q9BSI4 451 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 SPATA16Q9BXB7 569 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 IL1RL2Q9HB29 575 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ENTPD7Q9NQZ7 604 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 EIF2B3Q9NR50 452 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 RBPJLQ9UBG7 517 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 FAM50BQ9Y247 325 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 COL5A3P25940 1745 aaPredicted RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 CASTOR2A6NHX0 329 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RFPL1O75677 317 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ABCB1P08183 1280 aaPredicted RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 DARSP14868 501 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 LIMK2P53671 638 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 LSAMPQ13449 338 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 C16orf72Q14CZ0 275 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 SOWAHAQ2M3V2 549 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 VARS2Q5ST30 1063 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 HPS6Q86YV9 775 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 TOP6BLQ8N6T0 577 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PDCD6IPQ8WUM4 868 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 CCDC138Q96M89 665 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RBBP8Q99708 897 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 COPS7BQ9H9Q2 264 aaPredicted RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 RPRD1BQ9NQG5 326 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 TBC1D13Q9NVG8 400 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 TBCCD1Q9NVR7 557 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PRPF19Q9UMS4 504 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 FZD9O00144 591 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 AP2A1O95782 977 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 LMO2P25791 158 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 GDI1P31150 447 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RPL9P32969 192 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 KCNJ5P48544 419 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RAP1GDS1P52306 607 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PHC1P78364 1004 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 XIAPP98170 497 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ADRM1Q16186 407 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 MRNIPQ6NTE8 343 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ZBTB46Q86UZ6 589 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 SLC22A9Q8IVM8 553 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 UNC5BQ8IZJ1 945 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ARFGAP1Q8N6T3 406 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 MFSD3Q96ES6 412 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 PIWIL1Q96J94 861 aaKnown RBP10.45□□□□□ -0.74
LIG1-220ENST00000601091 ARL5BQ96KC2 179 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 GAD1Q99259 594 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 RTKNQ9BST9 563 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 ARMC7Q9H6L4 198 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 GOLGA2P5Q9HBQ8 144 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 CDH22Q9UJ99 828 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 CBY1Q9Y3M2 126 aa10.45□□□□□ -0.74
LIG1-220ENST00000601091 IGKV6-21A0A0C4DH24 114 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 ZBTB24O43167 697 aaPredicted RBP10.44□□□□□ -0.74
LIG1-220ENST00000601091 EDN1P05305 212 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 SMIM10L2AP0DMW4 78 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 SMIM10L2BP0DMW5 78 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 EDNRBP24530 442 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 PIK3R1P27986 724 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 PPARGP37231 505 aaPredicted RBP10.44□□□□□ -0.74
LIG1-220ENST00000601091 IDH3AP50213 366 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 RENBPP51606 427 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 HK2P52789 917 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 DUSP28Q4G0W2 176 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 FSTL4Q6MZW2 842 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 SHKBP1Q8TBC3 707 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 DLG3Q92796 817 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 SAMD11Q96NU1 681 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 RHOJQ9H4E5 214 aa10.44□□□□□ -0.74
LIG1-220ENST00000601091 WDR55Q9H6Y2 383 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms