RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 TSR1Q2NL82 804 aaKnown RBP17.76■□□□□ 0.43
HDDC3-201ENST00000330334 USP45Q70EL2 814 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 NLRP8Q86W28 1048 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 VSIG1Q86XK7 387 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 RAVER1Q8IY67 606 aaKnown RBP17.76■□□□□ 0.43
HDDC3-201ENST00000330334 GPR156Q8NFN8 814 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 NUS1Q96E22 293 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 DTD2Q96FN9 168 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 PDXPQ96GD0 296 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 LGR4Q9BXB1 951 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 FGF22Q9HCT0 170 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 NT5MQ9NPB1 228 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 GULP1Q9UBP9 304 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 PCDHGA8Q9Y5G5 932 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 ENTPD2Q9Y5L3 495 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 RAI2Q9Y5P3 530 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 RP1P56715 2156 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 MFSD11O43934 449 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 MPOP05164 745 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 PNLIPP16233 465 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 LHCGRP22888 699 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 ARHGAP25P42331 645 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 MLLT3P42568 568 aaPredicted RBP17.75■□□□□ 0.43
HDDC3-201ENST00000330334 TAS2R40P59535 323 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 KCTD16Q68DU8 428 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 VSTM4Q8IW00 320 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 KYQ8NBH2 561 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 ZNF248Q8NDW4 579 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 SEMA3CQ99985 751 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 PACSIN1Q9BY11 444 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 DEF6Q9H4E7 631 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 PHPT1Q9NRX4 125 aaPredicted RBP17.75■□□□□ 0.43
HDDC3-201ENST00000330334 APPL1Q9UKG1 709 aa17.75■□□□□ 0.43
HDDC3-201ENST00000330334 BPTFQ12830 3046 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ANKRD36A6QL64 1941 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 NPIPB15A6NHN6 443 aaPredicted RBP17.74■□□□□ 0.43
HDDC3-201ENST00000330334 TMX2-CTNND1H3BSU7 103 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 AKR1B10O60218 316 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 TPM1P09493 284 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 GLB1P16278 677 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ITPKBP27987 946 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 RPL26P61254 145 aaKnown RBP17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ARHGEF7Q14155 803 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 SPIDRQ14159 915 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 NYAP1Q6ZVC0 841 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 HSD11B1LQ7Z5J1 315 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 TECPR1Q7Z6L1 1165 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 PELI3Q8N2H9 469 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 PQLC3Q8N755 202 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ATXN7L3BQ96GX2 97 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 SLC46A1Q96NT5 459 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 PRORYQ9H606 182 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ASCL3Q9NQ33 180 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 THSD1Q9NS62 852 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 ABHD10Q9NUJ1 306 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 RBM22Q9NW64 420 aaKnown RBP eCLIP17.74■□□□□ 0.43
HDDC3-201ENST00000330334 DNPEPQ9ULA0 475 aa17.74■□□□□ 0.43
HDDC3-201ENST00000330334 RPL26L1Q9UNX3 145 aaKnown RBP17.74■□□□□ 0.43
HDDC3-201ENST00000330334 PRSS38A1L453 326 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 MTA2O94776 668 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 CEACAM5P06731 702 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 PDHA1P08559 390 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 CCNB1P14635 433 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 ZNF30P17039 623 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 KDELR1P24390 212 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 ETV3P41162 512 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 PCBP4P57723 403 aaKnown RBP17.73■□□□□ 0.43
HDDC3-201ENST00000330334 ITKQ08881 620 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 SOWAHCQ53LP3 525 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-201ENST00000330334 Q6ZVL8 140 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 TAF8Q7Z7C8 310 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 HEATR4Q86WZ0 1026 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 CPNE8Q86YQ8 564 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 FAM46DQ8NEK8 389 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 SLC35G2Q8TBE7 412 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 GPBAR1Q8TDU6 330 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 CCDC74AQ96AQ1 378 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 HDAC11Q96DB2 347 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 RNF157Q96PX1 679 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 FRMD8Q9BZ67 464 aaPredicted RBP17.73■□□□□ 0.43
HDDC3-201ENST00000330334 TMEM168Q9H0V1 697 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 CYP4F12Q9HCS2 524 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 MRPL40Q9NQ50 206 aaKnown RBP17.73■□□□□ 0.43
HDDC3-201ENST00000330334 TRNAU1APQ9NX07 287 aaKnown RBP17.73■□□□□ 0.43
HDDC3-201ENST00000330334 SIRPGQ9P1W8 387 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 SATB2Q9UPW6 733 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 PTPRQQ9UMZ3 2332 aa17.73■□□□□ 0.43
HDDC3-201ENST00000330334 A0A0J9YYE9 177 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 A0A1W2PNU3 283 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 TRBC1P01850 177 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 PYGLP06737 847 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 CA4P22748 312 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 CDK3Q00526 305 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 PTSQ03393 145 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 TLE3Q04726 772 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 SLC10A2Q12908 348 aaPredicted RBP17.72■□□□□ 0.43
HDDC3-201ENST00000330334 IHHQ14623 411 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 TCEAL1Q15170 157 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 CERCAMQ5T4B2 595 aa17.72■□□□□ 0.43
HDDC3-201ENST00000330334 LRRC38Q5VT99 294 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms