RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ATRXP46100 2492 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 SSU72P8A0A1W2PR75 194 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 PSMD11O00231 422 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 BRINP1O60477 761 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 CSO75390 466 aaKnown RBP19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 PROSCO94903 275 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 KRT7P08729 469 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 CYP2A6P11509 494 aaPredicted RBP19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 ABCG1P45844 678 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 LSSP48449 732 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 ARSEP51690 589 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 TBC1D25Q3MII6 688 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 TIGD7Q6NT04 549 aaPredicted RBP19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 NDUFAF2Q8N183 169 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 PGBD5Q8N414 524 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 TEX26Q8N6G2 289 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 ARL10Q8N8L6 244 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 KCTD6Q8NC69 237 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 OR6C4Q8NGE1 309 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 FATE1Q969F0 183 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 NSMCE3Q96MG7 304 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 ZNF578Q96N58 590 aaPredicted RBP19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 ZNF670Q9BS34 389 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 NOD2Q9HC29 1040 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 B4GALT6Q9UBX8 382 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 AMACRQ9UHK6 382 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 LRP4O75096 1905 aa19.13■□□□□ 0.65
CCDC28A-203ENST00000617445 PTPRQQ9UMZ3 2332 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 DXOO77932 396 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 CPP00450 1065 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 TPM1P09493 284 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 TGM2P21980 687 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 VIPR1P32241 457 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 DPYSL3Q14195 570 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 ACOX1Q15067 660 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 PAFAH1B3Q15102 231 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 ISXQ2M1V0 245 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 PNCKQ6P2M8 343 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 RBM44Q6ZP01 1051 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 RD3Q7Z3Z2 195 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 CBARPQ8N350 705 aaPredicted RBP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 OR56A4Q8NGH8 313 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 PDCD6IPQ8WUM4 868 aaKnown RBP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 SCRN2Q96FV2 425 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 COQ10AQ96MF6 247 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 DCBLD2Q96PD2 775 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 RBM15Q96T37 977 aaKnown RBP eCLIP19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 DNAJC7Q99615 494 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 DEF6Q9H4E7 631 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 WDR26Q9H7D7 661 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 POLR1BQ9H9Y6 1135 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 PPIL1Q9Y3C6 166 aa19.12■□□□□ 0.65
CCDC28A-203ENST00000617445 TLX3O43711 291 aaPredicted RBP19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 USP12O75317 370 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 MAN1A1P33908 653 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 GARSP41250 739 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 GALNT2Q10471 571 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 IFI16Q16666 785 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 ARMC12Q5T9G4 340 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 IGF2-ASQ6U949 168 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 USP45Q70EL2 814 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 PLA2G15Q8NCC3 412 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 FUBP1Q96AE4 644 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 TSGA13Q96PP4 275 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 POLR1EQ9GZS1 481 aaKnown RBP19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 GPR34Q9UPC5 381 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 PCDHB1Q9Y5F3 818 aa19.11■□□□□ 0.65
CCDC28A-203ENST00000617445 UNC13CQ8NB66 2214 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 IGSF10Q6WRI0 2623 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 TTC24A2A3L6 582 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 MATN3O15232 486 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 HEXIM1O94992 359 aaKnown RBP19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 PGLSO95336 258 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 GM2AP17900 193 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 MX2P20592 715 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 CCNCP24863 283 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 TEAD1P28347 426 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 ERVPABLB-1P60509 514 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 TRAF2Q12933 501 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 MMRN1Q13201 1228 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 CNGA3Q16281 694 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 ASTE1Q2TB18 679 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 ANKRD20A8PQ5CZ79 823 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 PCDH19Q8TAB3 1148 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 MAML1Q92585 1016 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 NUS1Q96E22 293 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 MCCC1Q96RQ3 725 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 GULP1Q9UBP9 304 aa19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 ARHGEF17Q96PE2 2063 aaPredicted RBP19.1■□□□□ 0.65
CCDC28A-203ENST00000617445 TMEM202A6NGA9 273 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 A8MX80 341 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 AKR1B10O60218 316 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 CELA2BP08218 269 aaPredicted RBP19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 CD48P09326 243 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 TMEM253P0C7T8 217 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 MAXP61244 160 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 GABREP78334 506 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 ARHGEF7Q14155 803 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 PERM1Q5SV97 790 aa19.09■□□□□ 0.65
CCDC28A-203ENST00000617445 NCBP2-AS2Q69YL0 99 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms