RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 SLC1A6P48664 564 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 MLLT1Q03111 559 aaPredicted RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 ZBTB16Q05516 673 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 PLD6Q8N2A8 252 aaKnown RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 LPCAT1Q8NF37 534 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 FIBINQ8TAL6 211 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 DNAJC1Q96KC8 554 aaKnown RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 SCYL1Q96KG9 808 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 TMEM120AQ9BXJ8 343 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 PRO3102Q9H379 93 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 TDP1Q9NUW8 608 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 NLE1Q9NVX2 485 aaPredicted RBP16.89■□□□□ 0.29
LDLR-206ENST00000557958 ZFP69BQ9UJL9 534 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 MYLKQ15746 1914 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 MYO9BQ13459 2157 aa16.89■□□□□ 0.29
LDLR-206ENST00000557958 CFAP73A6NFT4 308 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 TMEM114B3SHH9 223 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 PFDN6O15212 129 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 PRKCGP05129 697 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 KCNC3Q14003 757 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 GRIN2CQ14957 1233 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 FAM83EQ2M2I3 478 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 KLC3Q6P597 504 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 NCEH1Q6PIU2 408 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 AFTPHQ6ULP2 937 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ZCCHC23Q6ZST2 131 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 TPGS1Q6ZTW0 290 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ARID3BQ8IVW6 561 aaPredicted RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 ACVR1CQ8NER5 493 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ALG14Q96F25 216 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 MYLK2Q9H1R3 596 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 STN1Q9H668 368 aaKnown RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 ECT2Q9H8V3 914 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 CATSPERZQ9NTU4 200 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 DZANK1Q9NVP4 752 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ZNF358Q9NW07 568 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 LHX3Q9UBR4 397 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 RUVBL2Q9Y230 463 aaKnown RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 VPS9D1Q9Y2B5 631 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 CD3EAPO15446 510 aaKnown RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 TRIM13O60858 407 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 KLHL2O95198 593 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 CD160O95971 181 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 GOT2P00505 430 aaKnown RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 PMLP29590 882 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ARSDP51689 593 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 GTF2A1P52655 376 aaPredicted RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 SPRED3Q2MJR0 410 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 FBXW10Q5XX13 1052 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 FAM45BPQ6NSW5 357 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 CNSTQ6PJW8 725 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ZYG11AQ6WRX3 759 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 GET4Q7L5D6 327 aaPredicted RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 RNF135Q8IUD6 432 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 OR4L1Q8NH43 312 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 PIWIL2Q8TC59 973 aaKnown RBP16.88■□□□□ 0.29
LDLR-206ENST00000557958 FAM45AQ8TCE6 357 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 TBATAQ96M53 351 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 OMDQ99983 421 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 TUBB6Q9BUF5 446 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 C1QTNF1Q9BXJ1 281 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 PCDHGC4Q9Y5F7 938 aa16.88■□□□□ 0.29
LDLR-206ENST00000557958 ANKRD66B4E2M5 251 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 HGSO14964 777 aaPredicted RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 HNRNPCL1O60812 293 aaKnown RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 PRAMEF12O95522 483 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 LPOP22079 712 aaPredicted RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 FSHRP23945 695 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 SLC26A3P40879 764 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 RASSF2P50749 326 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 ZNF140P52738 457 aaPredicted RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 EPHB1P54762 984 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 TAS2R39P59534 338 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 ABCE1P61221 599 aaKnown RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 ITGA9Q13797 1035 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 AGAP9Q5VTM2 703 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 LRRC8EQ6NSJ5 796 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 EFHBQ8N7U6 833 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 PDCD6IPQ8WUM4 868 aaKnown RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 KCTD4Q8WVF5 259 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 INTS10Q9NVR2 710 aaKnown RBP16.87■□□□□ 0.29
LDLR-206ENST00000557958 PLK2Q9NYY3 685 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 KCTD3Q9Y597 815 aa16.87■□□□□ 0.29
LDLR-206ENST00000557958 G3V2L1 256 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 DNAJC6O75061 913 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 UNC5CO95185 931 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 S1PR4O95977 384 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 PRLP01236 227 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 PIRTP0C851 137 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CSNK1DP48730 415 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 RPL26P61254 145 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 ANKRD54Q6NXT1 300 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 CEP97Q8IW35 865 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 OR13C4Q8NGS5 318 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 WFDC5Q8TCV5 224 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 TCF12Q99081 682 aa16.86■□□□□ 0.29
LDLR-206ENST00000557958 MRPL57Q9BQC6 102 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 MRPL46Q9H2W6 279 aaKnown RBP16.86■□□□□ 0.29
LDLR-206ENST00000557958 TTYH1Q9H313 450 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms