RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 GLUD2P49448 558 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CARSP49589 748 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CASP4P49662 377 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KCNQ1P51787 676 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TFAMQ00059 246 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KRT17Q04695 432 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PPIDQ08752 370 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KLHL30Q0D2K2 578 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SLC14A1Q13336 389 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PUM1Q14671 1186 aaKnown RBP eCLIP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TMEM132DQ14C87 1099 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 RCN1Q15293 331 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 INAQ16352 499 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 BAK1Q16611 211 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 UPP1Q16831 310 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KNOP1Q1ED39 458 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KHDC1Q4VXA5 237 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SMUG1Q53HV7 270 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KHDC1LQ5JSQ8 128 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SH2D4BQ5SQS7 431 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PRAMEF14Q5SWL7 426 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CATSPEREQ5SY80 951 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 FAM171A1Q5VUB5 890 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SLFN12LQ6IEE8 588 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 LETMD1Q6P1Q0 360 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 C11orf88Q6PI97 169 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CD300LGQ6UXG3 332 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 C20orf204Q6ZNR8 217 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 DENND5BQ6ZUT9 1274 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PIWIL3Q7Z3Z3 882 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ZER1Q7Z7L7 766 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 EXOC3L1Q86VI1 746 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ERICH1Q86X53 443 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 LYSMD2Q8IV50 215 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 LSMEM2Q8N112 164 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 GPD1LQ8N335 351 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ARHGAP18Q8N392 663 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 OR5B17Q8NGF7 314 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 OR2I1PQ8NGU4 316 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 OR6Y1Q8NGX8 325 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PLEKHO2Q8TD55 490 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 DENND1AQ8TEH3 1009 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 MAML1Q92585 1016 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PTP4A1Q93096 173 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CCDC127Q96BQ5 260 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SDCCAG3Q96C92 435 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ZNF653Q96CK0 615 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 KLHDC7BQ96G42 594 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CLPTM1LQ96KA5 538 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ZNF570Q96NI8 536 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 MIPEPQ99797 713 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 RTKNQ9BST9 563 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 HERC2P3Q9BVR0 1158 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CAPS2Q9BXY5 557 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 MAGEB5Q9BZ81 275 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 MTMR12Q9C0I1 747 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 YIPF3Q9GZM5 350 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 FAM192AQ9GZU8 254 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TWSG1Q9GZX9 223 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ZCWPW1Q9H0M4 648 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 VCX3BQ9H321 246 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 ATXN3LQ9H3M9 355 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TLE6Q9H808 572 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TMEM206Q9H813 350 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 UBE2ZQ9H832 354 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 NOD2Q9HC29 1040 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PDE7BQ9NP56 450 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SSU72Q9NP77 194 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 PRDM8Q9NQV8 689 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 RXFP3Q9NSD7 469 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TBC1D23Q9NUY8 699 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SLC38A7Q9NVC3 462 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.64□□□□□ -1.671e-9■■□□□ 13.3
SF3B1-202ENST00000409915 IL20Q9NYY1 176 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TBC1D14Q9P2M4 693 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 THEGQ9P2T0 379 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 LPAR3Q9UBY5 353 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 UBQLN1Q9UMX0 589 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 MTO1Q9Y2Z2 717 aaKnown RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 LRRC42Q9Y546 428 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 TIMM13Q9Y5L4 95 aaPredicted RBP4.64□□□□□ -1.67
SF3B1-202ENST00000409915 NUMBLQ9Y6R0 609 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 SF3B1O75533 1304 aaKnown RBP eCLIP4.64□□□□□ -1.674e-7■■■■■ 31
SF3B1-202ENST00000409915 TRIP11Q15643 1979 aa4.64□□□□□ -1.67
SF3B1-202ENST00000409915 CITO14578 2027 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 ANK1P16157 1881 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 PDCD11Q14690 1871 aaKnown RBP4.63□□□□□ -1.67
SF3B1-202ENST00000409915 LRRD1A4D1F6 860 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 HTR3EA5X5Y0 456 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 C5orf60A6NFR6 353 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 GOLGA8KD6RF30 607 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 E7ENQ6 273 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 TEX28O15482 410 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 ADAM12O43184 909 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 ADAM20O43506 726 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 SYNCRIPO60506 623 aaKnown RBP4.63□□□□□ -1.67
SF3B1-202ENST00000409915 EXOC3O60645 756 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 KERAO60938 352 aa4.63□□□□□ -1.67
SF3B1-202ENST00000409915 RNGTTO60942 597 aaKnown RBP4.63□□□□□ -1.67
SF3B1-202ENST00000409915 SMIM24O75264 130 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms