RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ISXQ2M1V0 245 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 ASTE1Q2TB18 679 aaPredicted RBP17.8■□□□□ 0.44
HDDC3-201ENST00000330334 TBC1D25Q3MII6 688 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 SPECC1LQ69YQ0 1117 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PNCKQ6P2M8 343 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 H2AFVQ71UI9 128 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 GKN2Q86XP6 184 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 MAP7D3Q8IWC1 876 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PAF1Q8N7H5 531 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 ARL10Q8N8L6 244 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PLA2G15Q8NCC3 412 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 OR6C4Q8NGE1 309 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 FUBP1Q96AE4 644 aaKnown RBP17.8■□□□□ 0.44
HDDC3-201ENST00000330334 COQ10AQ96MF6 247 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 B4GALT6Q9UBX8 382 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PADI4Q9UM07 663 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PCDHB1Q9Y5F3 818 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 PCDHGC4Q9Y5F7 938 aa17.8■□□□□ 0.44
HDDC3-201ENST00000330334 SSU72P8A0A1W2PR75 194 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 PSMD11O00231 422 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 CBFA2T2O43439 604 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 GALNT2Q10471 571 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 DPYSL3Q14195 570 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 IGF2-ASQ6U949 168 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 KCTD6Q8NC69 237 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 OR56A4Q8NGH8 313 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 CTNNBL1Q8WYA6 563 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-201ENST00000330334 SCRN2Q96FV2 425 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 ZNF578Q96N58 590 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-201ENST00000330334 TSGA13Q96PP4 275 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 MCCC1Q96RQ3 725 aaPredicted RBP17.79■□□□□ 0.44
HDDC3-201ENST00000330334 ZNF670Q9BS34 389 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 POLR1BQ9H9Y6 1135 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 CTTNBP2NLQ9P2B4 639 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 AMACRQ9UHK6 382 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 DOLKQ9UPQ8 538 aa17.79■□□□□ 0.44
HDDC3-201ENST00000330334 ATRXP46100 2492 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 LRRK1Q38SD2 2015 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 TTC24A2A3L6 582 aaPredicted RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 USP12O75317 370 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 HEXIM1O94992 359 aaKnown RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 PGLSO95336 258 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 CELA2BP08218 269 aaPredicted RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 KRT7P08729 469 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 CD48P09326 243 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 CYP2A6P11509 494 aaPredicted RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 VIPR1P32241 457 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 MAN1A1P33908 653 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 GARSP41250 739 aaKnown RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 SSR1P43307 286 aaKnown RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 ABCG1P45844 678 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 ERVPABLB-1P60509 514 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 MMRN1Q13201 1228 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 ACOX1Q15067 660 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 ANKRD20A8PQ5CZ79 823 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 PERM1Q5SV97 790 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 ALG1LQ6GMV1 187 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 TIGD7Q6NT04 549 aaPredicted RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 OGFOD3Q6PK18 319 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 LRRC69Q6ZNQ3 347 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 RBM44Q6ZP01 1051 aaKnown RBP17.78■□□□□ 0.44
HDDC3-201ENST00000330334 PCDH19Q8TAB3 1148 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 MAML1Q92585 1016 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 FAF2Q96CS3 445 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 WDR26Q9H7D7 661 aa17.78■□□□□ 0.44
HDDC3-201ENST00000330334 TMEM202A6NGA9 273 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 NTN3O00634 580 aaPredicted RBP17.77■□□□□ 0.44
HDDC3-201ENST00000330334 MATN3O15232 486 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 CPP00450 1065 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 KRT10P13645 584 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 CCNCP24863 283 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 TEAD1P28347 426 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 MAXP61244 160 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 TRAF2Q12933 501 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 CNGA3Q16281 694 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 IFI16Q16666 785 aaKnown RBP17.77■□□□□ 0.44
HDDC3-201ENST00000330334 ATP13A4Q4VNC1 1196 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 ARMC12Q5T9G4 340 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 NCBP2-AS2Q69YL0 99 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 RD3Q7Z3Z2 195 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 NDUFAF2Q8N183 169 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 PDCD6IPQ8WUM4 868 aaKnown RBP17.77■□□□□ 0.44
HDDC3-201ENST00000330334 PIH1D2Q8WWB5 315 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 OR1E3Q8WZA6 343 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 HIC2Q96JB3 615 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 DCBLD2Q96PD2 775 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 CCDC3Q9BQI4 270 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 TEX101Q9BY14 249 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 POLR1EQ9GZS1 481 aaKnown RBP17.77■□□□□ 0.44
HDDC3-201ENST00000330334 HAUS2Q9NVX0 235 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 ZNHIT6Q9NWK9 470 aaKnown RBP17.77■□□□□ 0.44
HDDC3-201ENST00000330334 GPR34Q9UPC5 381 aa17.77■□□□□ 0.44
HDDC3-201ENST00000330334 A8MX80 341 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 ZNF487B1APH4 448 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 FZD6O60353 706 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 TMEM253P0C7T8 217 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 MYCLP1P12525 358 aaPredicted RBP17.76■□□□□ 0.43
HDDC3-201ENST00000330334 MX2P20592 715 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 GABREP78334 506 aa17.76■□□□□ 0.43
HDDC3-201ENST00000330334 DPTQ07507 201 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms