RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 CCL7P80098 99 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 KLHL30Q0D2K2 578 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 SLC10A7Q0GE19 358 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 MTM1Q13496 603 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 SPIDRQ14159 915 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 RFTN1Q14699 578 aaPredicted RBP13.35□□□□□ -0.27
CPSF4-210ENST00000469897 FILIP1LQ4L180 1135 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 LIPIQ6XZB0 460 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 GKN2Q86XP6 184 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 PCDH19Q8TAB3 1148 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 FUBP1Q96AE4 644 aaKnown RBP13.35□□□□□ -0.27
CPSF4-210ENST00000469897 ECHDC3Q96DC8 303 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 WDR92Q96MX6 357 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 DPH1Q9BZG8 443 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 MRPL40Q9NQ50 206 aaKnown RBP13.35□□□□□ -0.27
CPSF4-210ENST00000469897 PCDHGC4Q9Y5F7 938 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 PCDHGA8Q9Y5G5 932 aa13.35□□□□□ -0.27
CPSF4-210ENST00000469897 NYNRINQ9P2P1 1898 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 GOLGA4Q13439 2230 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 NTN3O00634 580 aaPredicted RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 C1QL1O75973 258 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 TNFSF15O95150 251 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 TCF4P15884 667 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 IL1R2P27930 398 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 TMPRSS3P57727 454 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 RALGDSQ12967 914 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 LBRQ14739 615 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ACOX1Q15067 660 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 IGF2-ASQ6U949 168 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 PCSK4Q6UW60 755 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 TAF8Q7Z7C8 310 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 PSTKQ8IV42 348 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 SFTPA2Q8IWL1 248 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 SDR16C5Q8N3Y7 309 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ARL14Q8N4G2 192 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 Q8N9G6 341 aaPredicted RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 KYQ8NBH2 561 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 LSM14AQ8ND56 463 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 OR56A4Q8NGH8 313 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ATL2Q8NHH9 583 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 WDR36Q8NI36 951 aaKnown RBP13.34□□□□□ -0.27
CPSF4-210ENST00000469897 WDR48Q8TAF3 677 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 FNIP1Q8TF40 1166 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 OR1E3Q8WZA6 343 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 CCDC74AQ96AQ1 378 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ZNF653Q96CK0 615 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 PDXPQ96GD0 296 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 PSKH2Q96QS6 385 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 BPIFA3Q9BQP9 254 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 LGR4Q9BXB1 951 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ZWILCHQ9H900 591 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 ETNK2Q9NVF9 386 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 SEPT3Q9UH03 358 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 MOSPD1Q9UJG1 213 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 IGSF10Q6WRI0 2623 aa13.34□□□□□ -0.27
CPSF4-210ENST00000469897 A0A1W2PQC6 194 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 CACNB4O00305 520 aaPredicted RBP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 RPLP0P05388 317 aaKnown RBP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 ELFN1P0C7U0 828 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 GM2AP17900 193 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 TRIM23P36406 574 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 PRKCIP41743 596 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 RENBPP51606 427 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 PDX1P52945 283 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 DPYSQ14117 519 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 NR1I3Q14994 352 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 PNCKQ6P2M8 343 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 DPPA4Q7L190 304 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 B3GNT8Q7Z7M8 397 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 PELI3Q8N2H9 469 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 LZTR1Q8N653 840 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 FAM46DQ8NEK8 389 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 CCL4L1Q8NHW4 92 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 PDCD6IPQ8WUM4 868 aaKnown RBP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 HSPH1Q92598 858 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 GFM1Q96RP9 751 aaKnown RBP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 RBM15Q96T37 977 aaKnown RBP eCLIP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 FOXP3Q9BZS1 431 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 TMEM168Q9H0V1 697 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 ISCUQ9H1K1 167 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 EPB41L5Q9HCM4 733 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 MRPL47Q9HD33 250 aaKnown RBP13.33□□□□□ -0.28
CPSF4-210ENST00000469897 DGKBQ9Y6T7 804 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 SCINQ9Y6U3 715 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 DOCK9Q9BZ29 2069 aa13.33□□□□□ -0.28
CPSF4-210ENST00000469897 CCDC187A0A096LP49 1063 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 A0A1B0GTH6 734 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.32□□□□□ -0.28
CPSF4-210ENST00000469897 A0A1W2PQM1 296 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 CDRT15L2A8MXV6 281 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 H3BRJ5 948 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 AGRPO00253 132 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 PEX11BO96011 259 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 HOXC4P09017 264 aaPredicted RBP13.32□□□□□ -0.28
CPSF4-210ENST00000469897 RARAP10276 462 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 PCK1P35558 622 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 ZNF165P49910 485 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 ZNF135P52742 658 aaPredicted RBP13.32□□□□□ -0.28
CPSF4-210ENST00000469897 UCNP55089 124 aa13.32□□□□□ -0.28
CPSF4-210ENST00000469897 AP1S1P61966 158 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms