RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 SLC8A2Q9UPR5 921 aa18.7■□□□□ 0.58
CLN3-206ENST00000360019 IKBKGQ9Y6K9 419 aa18.7■□□□□ 0.58
CLN3-206ENST00000360019 WASF2Q9Y6W5 498 aa18.7■□□□□ 0.58
CLN3-206ENST00000360019 UGT2B4P06133 528 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 ALPIP09923 528 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 GRIA2P42262 883 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 ABL2P42684 1182 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 RECQLP46063 649 aaPredicted RBP18.69■□□□□ 0.58
CLN3-206ENST00000360019 RPL26P61254 145 aaKnown RBP18.69■□□□□ 0.58
CLN3-206ENST00000360019 ZNF234Q14588 700 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 FNDC3BQ53EP0 1204 aaKnown RBP18.69■□□□□ 0.58
CLN3-206ENST00000360019 PDPK2PQ6A1A2 396 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 EXOC3L1Q86VI1 746 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 KDM1BQ8NB78 822 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 OR13C4Q8NGS5 318 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 GRIN3AQ8TCU5 1115 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 CSGALNACT1Q8TDX6 532 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 HLA-CQ95604 372 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 STMN4Q9H169 189 aaPredicted RBP18.69■□□□□ 0.58
CLN3-206ENST00000360019 SUV39H2Q9H5I1 410 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 RPL26L1Q9UNX3 145 aaKnown RBP18.69■□□□□ 0.58
CLN3-206ENST00000360019 F5P12259 2224 aa18.69■□□□□ 0.58
CLN3-206ENST00000360019 TRIOO75962 3097 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 A0A0J9YYE9 177 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 A0A0U1RQS6 177 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 TRBC1P01850 177 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 CTSLP07711 333 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 F7P08709 466 aaPredicted RBP18.68■□□□□ 0.58
CLN3-206ENST00000360019 HLA-EP13747 358 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 CTPS1P17812 591 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 PAMP19021 973 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 ARSDP51689 593 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 ZNF140P52738 457 aaPredicted RBP18.68■□□□□ 0.58
CLN3-206ENST00000360019 GYS2P54840 703 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 ACVR1Q04771 509 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 RAD51Q06609 339 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 NAB1Q13506 487 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 DEFB123Q8N688 67 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 DNAJC1Q96KC8 554 aaKnown RBP18.68■□□□□ 0.58
CLN3-206ENST00000360019 ZNF641Q96N77 438 aaPredicted RBP18.68■□□□□ 0.58
CLN3-206ENST00000360019 HEPHQ9BQS7 1158 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 TMEM245Q9H330 911 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 IARS2Q9NSE4 1012 aaKnown RBP18.68■□□□□ 0.58
CLN3-206ENST00000360019 GGT7Q9UJ14 662 aa18.68■□□□□ 0.58
CLN3-206ENST00000360019 CCL22O00626 93 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 CRTAMO95727 393 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 GALK1P51570 392 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 LAMB3Q13751 1172 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 GRM3Q14832 879 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 TAF1AQ15573 450 aaPredicted RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 SMAD2Q15796 467 aaKnown RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 HNRNPA1L2Q32P51 320 aaKnown RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 PACS1Q6VY07 963 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 GDPD4Q6W3E5 623 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 SLC44A3Q8N4M1 653 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 SPOCK2Q92563 424 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 PEX13Q92968 403 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 ZDHHC4Q9NPG8 344 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 RIMKLBQ9ULI2 386 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 COL4A2P08572 1712 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 LEFTY1O75610 366 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 APODP05090 189 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 CREB1P16220 341 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 NR1D1P20393 614 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 ATP5DP30049 168 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 HPDP32754 393 aaPredicted RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 PREPLQ4J6C6 727 aaPredicted RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 ARSIQ5FYB1 569 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 TXNDC11Q6PKC3 985 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 TRABD2AQ86V40 505 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 CNTN4Q8IWV2 1026 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 PLCD3Q8N3E9 789 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 TTC30BQ8N4P2 665 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 STYXQ8WUJ0 223 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 UCMAQ8WVF2 138 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 KLHL32Q96NJ5 620 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 MAGEE1Q9HCI5 957 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 THAP10Q9P2Z0 257 aaPredicted RBP18.67■□□□□ 0.58
CLN3-206ENST00000360019 IL36AQ9UHA7 158 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 ZNF711Q9Y462 761 aa18.67■□□□□ 0.58
CLN3-206ENST00000360019 TCF20Q9UGU0 1960 aaKnown RBP18.66■□□□□ 0.58
CLN3-206ENST00000360019 HMX2A2RU54 273 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 SLC4A1P02730 911 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 KRT15P19012 456 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 IL12RB1P42701 662 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 TMPRSS15P98073 1019 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 EMC10Q5UCC4 262 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 EGFLAMQ63HQ2 1017 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 SERPINA13PQ6UXR4 307 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 SRRM1Q8IYB3 904 aaKnown RBP18.66■□□□□ 0.58
CLN3-206ENST00000360019 PAF1Q8N7H5 531 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 FAM76AQ8TAV0 307 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 EZH1Q92800 747 aaPredicted RBP18.66■□□□□ 0.58
CLN3-206ENST00000360019 HDAC10Q969S8 669 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 EID2BQ96D98 161 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 TBATAQ96M53 351 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 P2RY13Q9BPV8 354 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 TRPV5Q9NQA5 729 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 HACD3Q9P035 362 aa18.66■□□□□ 0.58
CLN3-206ENST00000360019 IQANK1A0A1B0GTG1 560 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms