RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RECKO95980 971 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 ITGALP20701 1170 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 RCVRNP35243 200 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 SLC9A3P48764 834 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 CDONQ4KMG0 1287 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 METTL2BQ6P1Q9 378 aaKnown RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 DDIASQ8IXT1 998 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 FAR2Q96K12 515 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 CDRT15Q96T59 188 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 CRLF2Q9HC73 371 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 SNX15Q9NRS6 342 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 VAPBO95292 243 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 THP07101 528 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 CTSHP09668 335 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 IL10P22301 178 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 G0S2P27469 103 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 HSPA13P48723 471 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 RPL14P50914 215 aaKnown RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 RPP38P78345 283 aaKnown RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 RELAQ04206 551 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 YWHAHQ04917 246 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 MAP1SQ66K74 1059 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 IL31Q6EBC2 164 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 CMC1Q7Z7K0 106 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 ABI1Q8IZP0 508 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 TCAIMQ8N3R3 496 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 C18orf25Q96B23 403 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 ECSITQ9BQ95 431 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 SENP6Q9GZR1 1112 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 KLHL25Q9H0H3 589 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 RAD21L1Q9H4I0 556 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 ANLNQ9NQW6 1124 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 MAN1C1Q9NR34 630 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 TRNAU1APQ9NX07 287 aaKnown RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 CRNNQ9UBG3 495 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 SH3BGRL2Q9UJC5 107 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 LRRC42Q9Y546 428 aa10.5□□□□□ -0.73
LIG1-220ENST00000601091 TIMM13Q9Y5L4 95 aaPredicted RBP10.5□□□□□ -0.73
LIG1-220ENST00000601091 UGT1A9O60656 530 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 PLIN3O60664 434 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ATP6V1B1P15313 513 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ADSLP30566 484 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 PRKAR1BP31321 381 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 EML3Q32P44 896 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 TMC7Q7Z402 723 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 DHDDSQ86SQ9 333 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 C2orf69Q8N8R5 385 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 SLC7A6OSQ96CW6 309 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 KCTD15Q96SI1 283 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 PARK7Q99497 189 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 IFT22Q9H7X7 185 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 UGT1A7Q9HAW7 530 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 UGT1A10Q9HAW8 530 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 UGT1A8Q9HAW9 530 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 PNPLA8Q9NP80 782 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 COPG2Q9UBF2 871 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ANKRD6Q9Y2G4 727 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 MRPS7Q9Y2R9 242 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 PCDHGB3Q9Y5G1 929 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ANGPT2O15123 496 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ARIH2O95376 493 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 PGM3O95394 542 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 C22orf31O95567 290 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 LTFP02788 710 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 COL6A2P12110 1019 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 COX4I1P13073 169 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ZNF135P52742 658 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 PPP2R2BQ00005 443 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 CACNB2Q08289 660 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 FUT11Q495W5 492 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 TMEM259Q4ZIN3 620 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 NOL9Q5SY16 702 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 C9orf57Q5W0N0 161 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 SMYD5Q6GMV2 418 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 LAYNQ6UX15 382 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 GHITMQ9H3K2 345 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 DTLQ9NZJ0 730 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 AURKCQ9UQB9 309 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 UBA6A0AVT1 1052 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 C17orf102A2RUQ5 167 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 TRAFD1O14545 582 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 XPO1O14980 1071 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 PHGDHO43175 533 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 ZMPSTE24O75844 475 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 DLDP09622 509 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 CPT1AP50416 773 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 PPIL2Q13356 520 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ZNF124Q15973 351 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 DPYSL2Q16555 572 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 TTC23LQ6PF05 361 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 PPTC7Q8NI37 304 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 FICDQ9BVA6 458 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 TEX12Q9BXU0 123 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 ACE2Q9BYF1 805 aaPredicted RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 RBM22Q9NW64 420 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIG1-220ENST00000601091 OR12D3Q9UGF7 316 aa10.49□□□□□ -0.73
LIG1-220ENST00000601091 XIRP1Q702N8 1843 aaKnown RBP10.49□□□□□ -0.73
LIG1-220ENST00000601091 DPYSL4O14531 572 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 TOR1BO14657 336 aa10.48□□□□□ -0.73
LIG1-220ENST00000601091 CNOT3O75175 753 aaKnown RBP10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 1122.6 ms