RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ARMC12Q5T9G4 340 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 SEL1L3Q68CR1 1132 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 ZNF662Q6ZS27 426 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 BBS12Q6ZW61 710 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 PGBD5Q8N414 524 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 ASB12Q8WXK4 309 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 MYOCQ99972 504 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 OSBPL8Q9BZF1 889 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 GAREM1Q9H706 876 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 EBF2Q9HAK2 575 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 NOD2Q9HC29 1040 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 PCDH12Q9NPG4 1184 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 FSCN3Q9NQT6 498 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 DNAAF2Q9NVR5 837 aaKnown RBP13.09□□□□□ -0.31
CLK3-224ENST00000568605 SEPT10Q9P0V9 454 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 PHTF1Q9UMS5 762 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 ZFR2Q9UPR6 939 aaKnown RBP13.09□□□□□ -0.31
CLK3-224ENST00000568605 PCNX2A6NKB5 2137 aa13.09□□□□□ -0.31
CLK3-224ENST00000568605 HACD1B0YJ81 288 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 KCNK1O00180 336 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 TRAFD1O14545 582 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 CDX4O14627 284 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 RIOK3O14730 519 aaKnown RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 FPGTO14772 594 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 SPINT1O43278 529 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 HTRA2O43464 458 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 FTCDO95954 541 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 HLA-DQB2P05538 268 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 ELFN1P0C7U0 828 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 CYP2A6P11509 494 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 TIMP2P16035 220 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 CTSKP43235 329 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 ARRB1P49407 418 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 FAM193AP78312 1265 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 SLC14A1Q13336 389 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 PRKD1Q15139 912 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 KIF19Q2TAC6 998 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 HLA-BQ31612 363 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 TMEM52BQ4KMG9 183 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 LAYNQ6UX15 382 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 NPNTQ6UXI9 565 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 KYAT3Q6YP21 454 aaKnown RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 USP45Q70EL2 814 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 PTAR1Q7Z6K3 402 aaPredicted RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 TMEM145Q8NBT3 493 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 KLK6Q92876 244 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 VOPP1Q96AW1 172 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 HAUS1Q96CS2 278 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 KLHDC7BQ96G42 594 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 VAT1Q99536 393 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 IL12RB2Q99665 862 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 WRAP53Q9BUR4 548 aaKnown RBP13.08□□□□□ -0.32
CLK3-224ENST00000568605 FZD3Q9NPG1 666 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 GGT7Q9UJ14 662 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 DNPEPQ9ULA0 475 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 PCDHB9Q9Y5E1 797 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 SNX11Q9Y5W9 270 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 SLCO1B1Q9Y6L6 691 aa13.08□□□□□ -0.32
CLK3-224ENST00000568605 CFAP69A5D8W1 941 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 IGLON5A6NGN9 336 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 TLR4O00206 839 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 LZTS3O60299 673 aaPredicted RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 GJB3O75712 270 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 PGLSO95336 258 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 JCHAINP01591 159 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 C6P13671 934 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 PECAM1P16284 738 aaPredicted RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 TNNT3P45378 269 aaPredicted RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 EPHB1P54762 984 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 DSC2Q02487 901 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 TRAF2Q12933 501 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 XRCC4Q13426 336 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 SUZ12Q15022 739 aaKnown RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 LLGL1Q15334 1064 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 SEL1L2Q5TEA6 688 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 DPPA4Q7L190 304 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 DGLUCYQ7Z3D6 616 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 DCP2Q8IU60 420 aaKnown RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 CDKL3Q8IVW4 592 aaPredicted RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 TTC13Q8NBP0 860 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 TRIM58Q8NG06 486 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 QKIQ96PU8 341 aaKnown RBP eCLIP13.07□□□□□ -0.32
CLK3-224ENST00000568605 LENG8Q96PV6 779 aaPredicted RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 C1QTNF2Q9BXJ5 285 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 HEMGNQ9BXL5 484 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 TDRD1Q9BXT4 1180 aaKnown RBP13.07□□□□□ -0.32
CLK3-224ENST00000568605 SLC32A1Q9H598 525 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 LZTFL1Q9NQ48 299 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 TM7SF3Q9NS93 570 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 KCTD5Q9NXV2 234 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 PCDHGC4Q9Y5F7 938 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 RAI2Q9Y5P3 530 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 HS3ST3A1Q9Y663 406 aa13.07□□□□□ -0.32
CLK3-224ENST00000568605 A0A0U1RQJ8 604 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 A0A1W2PR77 199 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 TOR1BO14657 336 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 FLRT2O43155 660 aa13.06□□□□□ -0.32
CLK3-224ENST00000568605 STK10O94804 968 aaKnown RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 PAK4O96013 591 aaPredicted RBP13.06□□□□□ -0.32
CLK3-224ENST00000568605 THEGLP0DJG4 465 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms