RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 COL18A1P39060 1754 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 RTL1A6NKG5 1358 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 KIF24Q5T7B8 1368 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 AMPHP49418 695 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 CHRNA2Q15822 529 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 CC2D1BQ5T0F9 858 aaKnown RBP13.63□□□□□ -0.23
UPF1-213ENST00000601981 BTG4Q9NY30 223 aa13.63□□□□□ -0.23
UPF1-213ENST00000601981 FAM208AQ9UK61 1670 aaKnown RBP13.63□□□□□ -0.23
UPF1-213ENST00000601981 EVA1CP58658 441 aa13.62□□□□□ -0.23
UPF1-213ENST00000601981 UNC5CLQ8IV45 518 aa13.62□□□□□ -0.23
UPF1-213ENST00000601981 PRKRIP1Q9H875 184 aaPredicted RBP13.62□□□□□ -0.23
UPF1-213ENST00000601981 TRPC5Q9UL62 973 aaPredicted RBP13.62□□□□□ -0.23
UPF1-213ENST00000601981 BLMP54132 1417 aaPredicted RBP13.62□□□□□ -0.23
UPF1-213ENST00000601981 TNNT2P45379 298 aaPredicted RBP13.61□□□□□ -0.23
UPF1-213ENST00000601981 MAP3K19Q56UN5 1328 aa13.61□□□□□ -0.23
UPF1-213ENST00000601981 FLT4P35916 1363 aa13.6□□□□□ -0.23
UPF1-213ENST00000601981 CAMTA1Q9Y6Y1 1673 aa13.6□□□□□ -0.23
UPF1-213ENST00000601981 CNGB1Q14028 1251 aaPredicted RBP13.6□□□□□ -0.23
UPF1-213ENST00000601981 SMG6Q86US8 1419 aaKnown RBP13.6□□□□□ -0.23
UPF1-213ENST00000601981 BCL9LQ86UU0 1499 aa13.6□□□□□ -0.23
UPF1-213ENST00000601981 RRS1Q15050 365 aaKnown RBP13.59□□□□□ -0.23
UPF1-213ENST00000601981 IP6K1Q92551 441 aa13.59□□□□□ -0.23
UPF1-213ENST00000601981 YTHDC1Q96MU7 727 aaKnown RBP13.59□□□□□ -0.23
UPF1-213ENST00000601981 STRN4Q9NRL3 753 aa13.59□□□□□ -0.23
UPF1-213ENST00000601981 CCDC9Q9Y3X0 531 aaKnown RBP13.59□□□□□ -0.23
UPF1-213ENST00000601981 COL5A2P05997 1499 aaPredicted RBP13.59□□□□□ -0.23
UPF1-213ENST00000601981 PPM1GO15355 546 aaPredicted RBP13.58□□□□□ -0.24
UPF1-213ENST00000601981 CSB-PGBD3P0DP91 1061 aa13.58□□□□□ -0.24
UPF1-213ENST00000601981 QTRT2Q9H974 415 aaKnown RBP13.58□□□□□ -0.24
UPF1-213ENST00000601981 ATRNO75882 1429 aa13.57□□□□□ -0.24
UPF1-213ENST00000601981 PEAK1Q9H792 1746 aa13.57□□□□□ -0.24
UPF1-213ENST00000601981 HOXC9P31274 260 aa13.57□□□□□ -0.24
UPF1-213ENST00000601981 VPS72Q15906 364 aa13.57□□□□□ -0.24
UPF1-213ENST00000601981 CDK12Q9NYV4 1490 aaPredicted RBP13.56□□□□□ -0.24
UPF1-213ENST00000601981 RALBP1Q15311 655 aa13.56□□□□□ -0.24
UPF1-213ENST00000601981 EMILIN1Q9Y6C2 1016 aa13.56□□□□□ -0.24
UPF1-213ENST00000601981 WDR17Q8IZU2 1322 aa13.56□□□□□ -0.24
UPF1-213ENST00000601981 INSRP06213 1382 aa13.56□□□□□ -0.24
UPF1-213ENST00000601981 CRB1P82279 1406 aa13.56□□□□□ -0.24
UPF1-213ENST00000601981 FBLN1P23142 703 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 RXRBP28702 533 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 RBM6P78332 1123 aaKnown RBP13.55□□□□□ -0.24
UPF1-213ENST00000601981 TOM1L2Q6ZVM7 507 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 ANKRD24Q8TF21 1146 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 UPF1Q92900 1129 aaKnown RBP eCLIP13.55□□□□□ -0.24
UPF1-213ENST00000601981 POLKQ9UBT6 870 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 AXIN2Q9Y2T1 843 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 ERBB3P21860 1342 aa13.55□□□□□ -0.24
UPF1-213ENST00000601981 GJD4Q96KN9 370 aaPredicted RBP13.54□□□□□ -0.24
UPF1-213ENST00000601981 WNK3Q9BYP7 1800 aa13.54□□□□□ -0.24
UPF1-213ENST00000601981 PARD3Q8TEW0 1356 aa13.54□□□□□ -0.24
UPF1-213ENST00000601981 RGPD2P0DJD1 1756 aa13.53□□□□□ -0.24
UPF1-213ENST00000601981 LTV1Q96GA3 475 aaPredicted RBP13.53□□□□□ -0.24
UPF1-213ENST00000601981 CFAP53Q96M91 514 aa13.53□□□□□ -0.24
UPF1-213ENST00000601981 THRAP3Q9Y2W1 955 aaKnown RBP13.53□□□□□ -0.24
UPF1-213ENST00000601981 SPATA31A5Q5VU36 1347 aa13.53□□□□□ -0.24
UPF1-213ENST00000601981 SPATA31A7Q8IWB4 1347 aa13.53□□□□□ -0.24
UPF1-213ENST00000601981 HSP90AB2PQ58FF8 381 aa13.52□□□□□ -0.25
UPF1-213ENST00000601981 LARP1Q6PKG0 1096 aaKnown RBP13.52□□□□□ -0.25
UPF1-213ENST00000601981 NLRP2Q9NX02 1062 aa13.52□□□□□ -0.25
UPF1-213ENST00000601981 SPATA31A1Q5TZJ5 1347 aa13.52□□□□□ -0.25
UPF1-213ENST00000601981 GLI3P10071 1580 aa13.52□□□□□ -0.25
UPF1-213ENST00000601981 MTHFSP49914 203 aa13.51□□□□□ -0.25
UPF1-213ENST00000601981 TCP11L2Q8N4U5 519 aa13.51□□□□□ -0.25
UPF1-213ENST00000601981 CARD10Q9BWT7 1032 aa13.51□□□□□ -0.25
UPF1-213ENST00000601981 USP35Q9P2H5 1018 aa13.51□□□□□ -0.25
UPF1-213ENST00000601981 SRCAPQ6ZRS2 3230 aa13.5□□□□□ -0.25
UPF1-213ENST00000601981 A0A0G2JS52 829 aa13.5□□□□□ -0.25
UPF1-213ENST00000601981 PPP2R1AP30153 589 aa13.5□□□□□ -0.25
UPF1-213ENST00000601981 MYT1Q01538 1121 aa13.5□□□□□ -0.25
UPF1-213ENST00000601981 CDCA7Q9BWT1 371 aaPredicted RBP13.5□□□□□ -0.25
UPF1-213ENST00000601981 MYBBP1AQ9BQG0 1328 aaKnown RBP13.49□□□□□ -0.25
UPF1-213ENST00000601981 PARP4Q9UKK3 1724 aaKnown RBP13.49□□□□□ -0.25
UPF1-213ENST00000601981 BARGINQ6ZT62 677 aa13.48□□□□□ -0.25
UPF1-213ENST00000601981 MRS2Q9HD23 443 aa13.48□□□□□ -0.25
UPF1-213ENST00000601981 THSD7AQ9UPZ6 1657 aa13.47□□□□□ -0.25
UPF1-213ENST00000601981 DIAPH1O60610 1272 aaKnown RBP13.47□□□□□ -0.25
UPF1-213ENST00000601981 EIF4A2Q14240 407 aaKnown RBP13.47□□□□□ -0.25
UPF1-213ENST00000601981 FAM98CQ17RN3 349 aaKnown RBP13.47□□□□□ -0.25
UPF1-213ENST00000601981 BRWD3Q6RI45 1802 aa13.46□□□□□ -0.25
UPF1-213ENST00000601981 CCDC184Q52MB2 194 aa13.46□□□□□ -0.25
UPF1-213ENST00000601981 NUDCQ9Y266 331 aa13.46□□□□□ -0.25
UPF1-213ENST00000601981 RGPD1P0DJD0 1748 aa13.45□□□□□ -0.26
UPF1-213ENST00000601981 IL2RBP14784 551 aa13.45□□□□□ -0.26
UPF1-213ENST00000601981 RAPGEF4Q8WZA2 1011 aa13.45□□□□□ -0.26
UPF1-213ENST00000601981 RGS12O14924 1447 aa13.45□□□□□ -0.26
UPF1-213ENST00000601981 LRRC37A3O60309 1634 aa13.44□□□□□ -0.26
UPF1-213ENST00000601981 ONECUT3O60422 494 aaPredicted RBP13.44□□□□□ -0.26
UPF1-213ENST00000601981 NBPF6Q5VWK0 638 aa13.44□□□□□ -0.26
UPF1-213ENST00000601981 SEPT12Q8IYM1 358 aa13.44□□□□□ -0.26
UPF1-213ENST00000601981 NBPF4Q96M43 638 aa13.44□□□□□ -0.26
UPF1-213ENST00000601981 IGSF1Q8N6C5 1336 aa13.43□□□□□ -0.26
UPF1-213ENST00000601981 COL3A1P02461 1466 aaPredicted RBP13.43□□□□□ -0.26
UPF1-213ENST00000601981 TATP17735 454 aaPredicted RBP13.43□□□□□ -0.26
UPF1-213ENST00000601981 EYA1Q99502 592 aa13.43□□□□□ -0.26
UPF1-213ENST00000601981 PLEKHG2Q9H7P9 1386 aa13.43□□□□□ -0.26
UPF1-213ENST00000601981 DISP2A7MBM2 1401 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 NCAPD2Q15021 1401 aa13.42□□□□□ -0.26
UPF1-213ENST00000601981 U2SURPO15042 1029 aaKnown RBP13.42□□□□□ -0.26
UPF1-213ENST00000601981 IL13P35225 146 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms