RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 AMER1Q5JTC6 1135 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-207ENST00000597136 STRN4Q9NRL3 753 aa20.51■□□□□ 0.87
TRIM28-207ENST00000597136 TRPC5Q9UL62 973 aaPredicted RBP20.51■□□□□ 0.87
TRIM28-207ENST00000597136 PEAK1Q9H792 1746 aa20.51■□□□□ 0.87
TRIM28-207ENST00000597136 BRWD3Q6RI45 1802 aa20.51■□□□□ 0.87
TRIM28-207ENST00000597136 GLI3P10071 1580 aa20.51■□□□□ 0.87
TRIM28-207ENST00000597136 RRS1Q15050 365 aaKnown RBP20.51■□□□□ 0.87
TRIM28-207ENST00000597136 CNGB1Q14028 1251 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-207ENST00000597136 TNNT2P45379 298 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-207ENST00000597136 DIEXFQ68CQ4 756 aaKnown RBP20.49■□□□□ 0.87
TRIM28-207ENST00000597136 MAP3K19Q56UN5 1328 aa20.49■□□□□ 0.87
TRIM28-207ENST00000597136 RXRBP28702 533 aa20.48■□□□□ 0.87
TRIM28-207ENST00000597136 EVA1CP58658 441 aa20.48■□□□□ 0.87
TRIM28-207ENST00000597136 VPS72Q15906 364 aa20.48■□□□□ 0.87
TRIM28-207ENST00000597136 GJD4Q96KN9 370 aaPredicted RBP20.48■□□□□ 0.87
TRIM28-207ENST00000597136 COL5A2P05997 1499 aaPredicted RBP20.47■□□□□ 0.87
TRIM28-207ENST00000597136 RBM6P78332 1123 aaKnown RBP20.47■□□□□ 0.87
TRIM28-207ENST00000597136 LARP1Q6PKG0 1096 aaKnown RBP20.47■□□□□ 0.87
TRIM28-207ENST00000597136 CC2D1BQ5T0F9 858 aaKnown RBP20.46■□□□□ 0.87
TRIM28-207ENST00000597136 CCDC9Q9Y3X0 531 aaKnown RBP20.46■□□□□ 0.87
TRIM28-207ENST00000597136 MORC1Q86VD1 984 aa20.44■□□□□ 0.86
TRIM28-207ENST00000597136 IP6K1Q92551 441 aa20.44■□□□□ 0.86
TRIM28-207ENST00000597136 EMILIN1Q9Y6C2 1016 aa20.44■□□□□ 0.86
TRIM28-207ENST00000597136 NSD2O96028 1365 aa20.44■□□□□ 0.86
TRIM28-207ENST00000597136 SPATA31A5Q5VU36 1347 aa20.43■□□□□ 0.86
TRIM28-207ENST00000597136 SPATA31A7Q8IWB4 1347 aa20.43■□□□□ 0.86
TRIM28-207ENST00000597136 AMPHP49418 695 aa20.43■□□□□ 0.86
TRIM28-207ENST00000597136 ABCC6O95255 1503 aa20.43■□□□□ 0.86
TRIM28-207ENST00000597136 HOXC9P31274 260 aa20.42■□□□□ 0.86
TRIM28-207ENST00000597136 USP35Q9P2H5 1018 aa20.42■□□□□ 0.86
TRIM28-207ENST00000597136 POLKQ9UBT6 870 aa20.42■□□□□ 0.86
TRIM28-207ENST00000597136 WNK3Q9BYP7 1800 aa20.42■□□□□ 0.86
TRIM28-207ENST00000597136 SPATA31A1Q5TZJ5 1347 aa20.41■□□□□ 0.86
TRIM28-207ENST00000597136 LTV1Q96GA3 475 aaPredicted RBP20.41■□□□□ 0.86
TRIM28-207ENST00000597136 PPM1GO15355 546 aaPredicted RBP20.4■□□□□ 0.86
TRIM28-207ENST00000597136 HSP90AB2PQ58FF8 381 aa20.4■□□□□ 0.86
TRIM28-207ENST00000597136 ANKRD24Q8TF21 1146 aa20.4■□□□□ 0.86
TRIM28-207ENST00000597136 KAT6BQ8WYB5 2073 aa20.39■□□□□ 0.86
TRIM28-207ENST00000597136 WDR17Q8IZU2 1322 aa20.39■□□□□ 0.86
TRIM28-207ENST00000597136 FAM208AQ9UK61 1670 aaKnown RBP20.38■□□□□ 0.85
TRIM28-207ENST00000597136 CSB-PGBD3P0DP91 1061 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 FAM98CQ17RN3 349 aaKnown RBP20.38■□□□□ 0.85
TRIM28-207ENST00000597136 TOM1L2Q6ZVM7 507 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 RGS12O14924 1447 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 CRB1P82279 1406 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 NPC1L1Q9UHC9 1359 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 ERBB3P21860 1342 aa20.38■□□□□ 0.85
TRIM28-207ENST00000597136 BLMP54132 1417 aaPredicted RBP20.37■□□□□ 0.85
TRIM28-207ENST00000597136 EP400Q96L91 3159 aa20.36■□□□□ 0.85
TRIM28-207ENST00000597136 ONECUT3O60422 494 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-207ENST00000597136 CDK12Q9NYV4 1490 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-207ENST00000597136 THSD7AQ9UPZ6 1657 aa20.35■□□□□ 0.85
TRIM28-207ENST00000597136 RTL1A6NKG5 1358 aa20.35■□□□□ 0.85
TRIM28-207ENST00000597136 FLT4P35916 1363 aa20.35■□□□□ 0.85
TRIM28-207ENST00000597136 NLRP2Q9NX02 1062 aa20.34■□□□□ 0.85
TRIM28-207ENST00000597136 SEPT12Q8IYM1 358 aa20.34■□□□□ 0.85
TRIM28-207ENST00000597136 TCP11L2Q8N4U5 519 aa20.34■□□□□ 0.85
TRIM28-207ENST00000597136 CARD10Q9BWT7 1032 aa20.34■□□□□ 0.85
TRIM28-207ENST00000597136 INSRP06213 1382 aa20.34■□□□□ 0.85
TRIM28-207ENST00000597136 KIF24Q5T7B8 1368 aa20.33■□□□□ 0.84
TRIM28-207ENST00000597136 PARP4Q9UKK3 1724 aaKnown RBP20.33■□□□□ 0.84
TRIM28-207ENST00000597136 ANP32CO43423 234 aa20.31■□□□□ 0.84
TRIM28-207ENST00000597136 MTHFSP49914 203 aa20.31■□□□□ 0.84
TRIM28-207ENST00000597136 SMG6Q86US8 1419 aaKnown RBP20.31■□□□□ 0.84
TRIM28-207ENST00000597136 A0A0G2JS52 829 aa20.3■□□□□ 0.84
TRIM28-207ENST00000597136 MYT1Q01538 1121 aa20.3■□□□□ 0.84
TRIM28-207ENST00000597136 NBPF6Q5VWK0 638 aa20.3■□□□□ 0.84
TRIM28-207ENST00000597136 BARGINQ6ZT62 677 aa20.3■□□□□ 0.84
TRIM28-207ENST00000597136 NBPF4Q96M43 638 aa20.3■□□□□ 0.84
TRIM28-207ENST00000597136 THRAP3Q9Y2W1 955 aaKnown RBP20.29■□□□□ 0.84
TRIM28-207ENST00000597136 USHBP1Q8N6Y0 703 aa20.29■□□□□ 0.84
TRIM28-207ENST00000597136 PRKRIP1Q9H875 184 aaPredicted RBP20.29■□□□□ 0.84
TRIM28-207ENST00000597136 EIF4A2Q14240 407 aaKnown RBP20.27■□□□□ 0.84
TRIM28-207ENST00000597136 LRRC37A3O60309 1634 aa20.27■□□□□ 0.84
TRIM28-207ENST00000597136 FAM182BQ5T319 152 aa20.26■□□□□ 0.83
TRIM28-207ENST00000597136 MIER1Q8N108 512 aa20.26■□□□□ 0.83
TRIM28-207ENST00000597136 PPP2R1AP30153 589 aa20.25■□□□□ 0.83
TRIM28-207ENST00000597136 SBF2Q86WG5 1849 aa20.25■□□□□ 0.83
TRIM28-207ENST00000597136 RALBP1Q15311 655 aa20.25■□□□□ 0.83
TRIM28-207ENST00000597136 EYA1Q99502 592 aa20.25■□□□□ 0.83
TRIM28-207ENST00000597136 PARD3Q8TEW0 1356 aa20.25■□□□□ 0.83
TRIM28-207ENST00000597136 DISP2A7MBM2 1401 aa20.24■□□□□ 0.83
TRIM28-207ENST00000597136 RGPD1P0DJD0 1748 aa20.24■□□□□ 0.83
TRIM28-207ENST00000597136 SHANK3Q9BYB0 1731 aa20.24■□□□□ 0.83
TRIM28-207ENST00000597136 KRT27Q7Z3Y8 459 aa20.22■□□□□ 0.83
TRIM28-207ENST00000597136 IL2RBP14784 551 aa20.21■□□□□ 0.83
TRIM28-207ENST00000597136 IL13P35225 146 aa20.21■□□□□ 0.83
TRIM28-207ENST00000597136 DDB1Q16531 1140 aa20.2■□□□□ 0.82
TRIM28-207ENST00000597136 MEGF6O75095 1541 aa20.2■□□□□ 0.82
TRIM28-207ENST00000597136 COL3A1P02461 1466 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-207ENST00000597136 EXOC5O00471 708 aa20.18■□□□□ 0.82
TRIM28-207ENST00000597136 PDE3BQ13370 1112 aa20.18■□□□□ 0.82
TRIM28-207ENST00000597136 CDCA7Q9BWT1 371 aaPredicted RBP20.18■□□□□ 0.82
TRIM28-207ENST00000597136 NCAPD2Q15021 1401 aa20.18■□□□□ 0.82
TRIM28-207ENST00000597136 VIRMAQ69YN4 1812 aaKnown RBP20.17■□□□□ 0.82
TRIM28-207ENST00000597136 SOCS7O14512 581 aa20.17■□□□□ 0.82
TRIM28-207ENST00000597136 MARCH10Q8NA82 808 aaPredicted RBP20.17■□□□□ 0.82
TRIM28-207ENST00000597136 IGSF1Q8N6C5 1336 aa20.16■□□□□ 0.82
TRIM28-207ENST00000597136 MYBBP1AQ9BQG0 1328 aaKnown RBP20.16■□□□□ 0.82
TRIM28-207ENST00000597136 PKD1L3Q7Z443 1732 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms