RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 DCAF8L1A6NGE4 600 aa17.58■□□□□ 0.4
SHKBP1-209ENST00000595803 TNNT2P45379 298 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-209ENST00000595803 NME9Q86XW9 330 aa17.58■□□□□ 0.4
SHKBP1-209ENST00000595803 ZNF784Q8NCA9 323 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-209ENST00000595803 TNS3Q68CZ2 1445 aa17.57■□□□□ 0.4
SHKBP1-209ENST00000595803 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-209ENST00000595803 TTC21AQ8NDW8 1320 aa17.57■□□□□ 0.4
SHKBP1-209ENST00000595803 COG3Q96JB2 828 aa17.57■□□□□ 0.4
SHKBP1-209ENST00000595803 RREB1Q92766 1687 aa17.57■□□□□ 0.4
SHKBP1-209ENST00000595803 MON2Q7Z3U7 1717 aa17.56■□□□□ 0.4
SHKBP1-209ENST00000595803 PAK3O75914 559 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-209ENST00000595803 CABLES1Q8TDN4 633 aa17.56■□□□□ 0.4
SHKBP1-209ENST00000595803 CAMKK2Q96RR4 588 aa17.56■□□□□ 0.4
SHKBP1-209ENST00000595803 PPP1R1BQ9UD71 204 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-209ENST00000595803 NUP188Q5SRE5 1749 aa17.55■□□□□ 0.4
SHKBP1-209ENST00000595803 THSD7AQ9UPZ6 1657 aa17.55■□□□□ 0.4
SHKBP1-209ENST00000595803 PLEKHG5O94827 1062 aa17.54■□□□□ 0.4
SHKBP1-209ENST00000595803 KRT28Q7Z3Y7 464 aa17.54■□□□□ 0.4
SHKBP1-209ENST00000595803 FAM9BQ8IZU0 186 aa17.53■□□□□ 0.4
SHKBP1-209ENST00000595803 YTHDC1Q96MU7 727 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-209ENST00000595803 UTRNP46939 3433 aa17.53■□□□□ 0.4
SHKBP1-209ENST00000595803 SSH2Q76I76 1423 aa17.53■□□□□ 0.4
SHKBP1-209ENST00000595803 ABTB2Q8N961 1025 aa17.52■□□□□ 0.4
SHKBP1-209ENST00000595803 KIF20BQ96Q89 1820 aa17.51■□□□□ 0.39
SHKBP1-209ENST00000595803 FAM83GA6ND36 823 aa17.51■□□□□ 0.39
SHKBP1-209ENST00000595803 SPON1Q9HCB6 807 aa17.51■□□□□ 0.39
SHKBP1-209ENST00000595803 MTHFSP49914 203 aa17.5■□□□□ 0.39
SHKBP1-209ENST00000595803 NLRP6P59044 892 aa17.5■□□□□ 0.39
SHKBP1-209ENST00000595803 C1QTNF8P60827 252 aa17.5■□□□□ 0.39
SHKBP1-209ENST00000595803 PNISRQ8TF01 805 aaKnown RBP17.5■□□□□ 0.39
SHKBP1-209ENST00000595803 CFAP53Q96M91 514 aa17.5■□□□□ 0.39
SHKBP1-209ENST00000595803 TRIM37O94972 964 aa17.49■□□□□ 0.39
SHKBP1-209ENST00000595803 ANKRD26Q9UPS8 1709 aa17.48■□□□□ 0.39
SHKBP1-209ENST00000595803 USP31Q70CQ4 1352 aa17.48■□□□□ 0.39
SHKBP1-209ENST00000595803 CEP350Q5VT06 3117 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 KCNQ2O43526 872 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 APBA3O96018 575 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 NUTM2GQ5VZR2 741 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 LMOD2Q6P5Q4 547 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 BTG4Q9NY30 223 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 ARHGEF10O15013 1369 aa17.47■□□□□ 0.39
SHKBP1-209ENST00000595803 COL14A1Q05707 1796 aaKnown RBP17.46■□□□□ 0.39
SHKBP1-209ENST00000595803 NRKQ7Z2Y5 1582 aa17.46■□□□□ 0.39
SHKBP1-209ENST00000595803 SPATA31A5Q5VU36 1347 aa17.46■□□□□ 0.38
SHKBP1-209ENST00000595803 SPATA31A7Q8IWB4 1347 aa17.46■□□□□ 0.38
SHKBP1-209ENST00000595803 SBNO1A3KN83 1393 aa17.45■□□□□ 0.38
SHKBP1-209ENST00000595803 WDR43Q15061 677 aaKnown RBP eCLIP17.45■□□□□ 0.38
SHKBP1-209ENST00000595803 AATKQ6ZMQ8 1374 aa17.44■□□□□ 0.38
SHKBP1-209ENST00000595803 PPM1GO15355 546 aaPredicted RBP17.44■□□□□ 0.38
SHKBP1-209ENST00000595803 FBLN1P23142 703 aa17.44■□□□□ 0.38
SHKBP1-209ENST00000595803 NBPF14Q5TI25 921 aa17.44■□□□□ 0.38
SHKBP1-209ENST00000595803 POLKQ9UBT6 870 aa17.44■□□□□ 0.38
SHKBP1-209ENST00000595803 SOX12O15370 315 aa17.43■□□□□ 0.38
SHKBP1-209ENST00000595803 FAM196AQ6ZSG2 479 aa17.43■□□□□ 0.38
SHKBP1-209ENST00000595803 OVOS2A0A0J9YW53 1432 aa17.42■□□□□ 0.38
SHKBP1-209ENST00000595803 OVOS2Q6IE36 1432 aa17.42■□□□□ 0.38
SHKBP1-209ENST00000595803 KCNH5Q8NCM2 988 aa17.41■□□□□ 0.38
SHKBP1-209ENST00000595803 NUDCQ9Y266 331 aa17.41■□□□□ 0.38
SHKBP1-209ENST00000595803 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
SHKBP1-209ENST00000595803 ADAMTS8Q9UP79 889 aa17.39■□□□□ 0.37
SHKBP1-209ENST00000595803 EMILIN1Q9Y6C2 1016 aa17.39■□□□□ 0.37
SHKBP1-209ENST00000595803 MAP2P11137 1827 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-209ENST00000595803 PIK3C2AO00443 1686 aa17.39■□□□□ 0.37
SHKBP1-209ENST00000595803 CASZ1Q86V15 1759 aa17.38■□□□□ 0.37
SHKBP1-209ENST00000595803 DIAPH1O60610 1272 aaKnown RBP17.38■□□□□ 0.37
SHKBP1-209ENST00000595803 HNRNPUQ00839 825 aaKnown RBP eCLIP17.38■□□□□ 0.37
SHKBP1-209ENST00000595803 AMPHP49418 695 aa17.37■□□□□ 0.37
SHKBP1-209ENST00000595803 CHD4Q14839 1912 aa17.37■□□□□ 0.37
SHKBP1-209ENST00000595803 TRPM3Q9HCF6 1732 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-209ENST00000595803 INSRP06213 1382 aa17.36■□□□□ 0.37
SHKBP1-209ENST00000595803 U2SURPO15042 1029 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 GCP02774 474 aa17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 MAP3K19Q56UN5 1328 aa17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 SPATA31A1Q5TZJ5 1347 aa17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 ALS2Q96Q42 1657 aa17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 CRYBG1Q9Y4K1 1723 aa17.35■□□□□ 0.37
SHKBP1-209ENST00000595803 CENPBP07199 599 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-209ENST00000595803 U2AF1L5P0DN76 240 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-209ENST00000595803 U2AF1Q01081 240 aaKnown RBP eCLIP17.34■□□□□ 0.37
SHKBP1-209ENST00000595803 ZBTB7CA1YPR0 619 aa17.33■□□□□ 0.36
SHKBP1-209ENST00000595803 USP54Q70EL1 1684 aa17.32■□□□□ 0.36
SHKBP1-209ENST00000595803 SMG6Q86US8 1419 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-209ENST00000595803 USP19O94966 1318 aa17.32■□□□□ 0.36
SHKBP1-209ENST00000595803 IL13P35225 146 aa17.31■□□□□ 0.36
SHKBP1-209ENST00000595803 HSP90AB2PQ58FF8 381 aa17.31■□□□□ 0.36
SHKBP1-209ENST00000595803 PNNQ9H307 717 aaKnown RBP17.31■□□□□ 0.36
SHKBP1-209ENST00000595803 GIGYF1O75420 1035 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-209ENST00000595803 ANO8Q9HCE9 1232 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-209ENST00000595803 PRDM11Q9NQV5 511 aa17.3■□□□□ 0.36
SHKBP1-209ENST00000595803 RGPD3A6NKT7 1758 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-209ENST00000595803 RGPD4Q7Z3J3 1758 aa17.3■□□□□ 0.36
SHKBP1-209ENST00000595803 KIF24Q5T7B8 1368 aa17.29■□□□□ 0.36
SHKBP1-209ENST00000595803 HOXC9P31274 260 aa17.29■□□□□ 0.36
SHKBP1-209ENST00000595803 IP6K1Q92551 441 aa17.29■□□□□ 0.36
SHKBP1-209ENST00000595803 FLT4P35916 1363 aa17.28■□□□□ 0.36
SHKBP1-209ENST00000595803 ZBTB7AO95365 584 aa17.28■□□□□ 0.36
SHKBP1-209ENST00000595803 PTGER2P43116 358 aa17.28■□□□□ 0.36
SHKBP1-209ENST00000595803 ZC3H6P61129 1189 aaKnown RBP17.28■□□□□ 0.36
SHKBP1-209ENST00000595803 PDE3BQ13370 1112 aa17.28■□□□□ 0.36
SHKBP1-209ENST00000595803 EIF4A2Q14240 407 aaKnown RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms