RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 ABCC6O95255 1503 aa29.2■■■□□ 2.27
ATG4D-212ENST00000590096 NSD2O96028 1365 aa29.2■■■□□ 2.26
ATG4D-212ENST00000590096 ANKRD26Q9UPS8 1709 aa29.2■■■□□ 2.26
ATG4D-212ENST00000590096 COL5A2P05997 1499 aaPredicted RBP29.18■■■□□ 2.26
ATG4D-212ENST00000590096 CDK12Q9NYV4 1490 aaPredicted RBP29.17■■■□□ 2.26
ATG4D-212ENST00000590096 AXIN2Q9Y2T1 843 aa29.16■■■□□ 2.26
ATG4D-212ENST00000590096 GLI3P10071 1580 aa29.16■■■□□ 2.26
ATG4D-212ENST00000590096 RGPD5Q99666 1765 aa29.16■■■□□ 2.26
ATG4D-212ENST00000590096 FBLN1P23142 703 aa29.14■■■□□ 2.26
ATG4D-212ENST00000590096 MAP3K19Q56UN5 1328 aa29.14■■■□□ 2.25
ATG4D-212ENST00000590096 SPATA31A5Q5VU36 1347 aa29.14■■■□□ 2.25
ATG4D-212ENST00000590096 SPATA31A7Q8IWB4 1347 aa29.14■■■□□ 2.25
ATG4D-212ENST00000590096 AMPHP49418 695 aa29.13■■■□□ 2.25
ATG4D-212ENST00000590096 LARP1Q6PKG0 1096 aaKnown RBP29.13■■■□□ 2.25
ATG4D-212ENST00000590096 PER1O15534 1290 aaPredicted RBP29.12■■■□□ 2.25
ATG4D-212ENST00000590096 RRS1Q15050 365 aaKnown RBP29.12■■■□□ 2.25
ATG4D-212ENST00000590096 RGS12O14924 1447 aa29.11■■■□□ 2.25
ATG4D-212ENST00000590096 CSB-PGBD3P0DP91 1061 aa29.1■■■□□ 2.25
ATG4D-212ENST00000590096 AMER1Q5JTC6 1135 aaPredicted RBP29.1■■■□□ 2.25
ATG4D-212ENST00000590096 MORC1Q86VD1 984 aa29.1■■■□□ 2.25
ATG4D-212ENST00000590096 IP6K1Q92551 441 aa29.1■■■□□ 2.25
ATG4D-212ENST00000590096 SPATA31A1Q5TZJ5 1347 aa29.1■■■□□ 2.25
ATG4D-212ENST00000590096 RTL1A6NKG5 1358 aa29.1■■■□□ 2.25
ATG4D-212ENST00000590096 BLMP54132 1417 aaPredicted RBP29.1■■■□□ 2.25
ATG4D-212ENST00000590096 WDR17Q8IZU2 1322 aa29.09■■■□□ 2.25
ATG4D-212ENST00000590096 CRB1P82279 1406 aa29.09■■■□□ 2.25
ATG4D-212ENST00000590096 TNNT2P45379 298 aaPredicted RBP29.08■■■□□ 2.25
ATG4D-212ENST00000590096 TOM1L2Q6ZVM7 507 aa29.08■■■□□ 2.25
ATG4D-212ENST00000590096 USP35Q9P2H5 1018 aa29.08■■■□□ 2.25
ATG4D-212ENST00000590096 HOXC9P31274 260 aa29.07■■■□□ 2.24
ATG4D-212ENST00000590096 FAM98CQ17RN3 349 aaKnown RBP29.06■■■□□ 2.24
ATG4D-212ENST00000590096 UPF1Q92900 1129 aaKnown RBP eCLIP29.06■■■□□ 2.24
ATG4D-212ENST00000590096 KIF24Q5T7B8 1368 aa29.05■■■□□ 2.24
ATG4D-212ENST00000590096 ERBB3P21860 1342 aa29.05■■■□□ 2.24
ATG4D-212ENST00000590096 A0A0G2JS52 829 aa29.05■■■□□ 2.24
ATG4D-212ENST00000590096 MYT1Q01538 1121 aa29.05■■■□□ 2.24
ATG4D-212ENST00000590096 ANKRD24Q8TF21 1146 aa29.05■■■□□ 2.24
ATG4D-212ENST00000590096 MAP2P11137 1827 aaKnown RBP29.05■■■□□ 2.24
ATG4D-212ENST00000590096 FLT4P35916 1363 aa29.04■■■□□ 2.24
ATG4D-212ENST00000590096 CC2D1BQ5T0F9 858 aaKnown RBP29.04■■■□□ 2.24
ATG4D-212ENST00000590096 TCP11L2Q8N4U5 519 aa29.04■■■□□ 2.24
ATG4D-212ENST00000590096 EMILIN1Q9Y6C2 1016 aa29.03■■■□□ 2.24
ATG4D-212ENST00000590096 NPC1L1Q9UHC9 1359 aa29.02■■■□□ 2.24
ATG4D-212ENST00000590096 ONECUT3O60422 494 aaPredicted RBP29.02■■■□□ 2.24
ATG4D-212ENST00000590096 THRAP3Q9Y2W1 955 aaKnown RBP29.02■■■□□ 2.24
ATG4D-212ENST00000590096 PEAK1Q9H792 1746 aa29.01■■■□□ 2.23
ATG4D-212ENST00000590096 PPM1GO15355 546 aaPredicted RBP29.01■■■□□ 2.23
ATG4D-212ENST00000590096 SEPT12Q8IYM1 358 aa29.01■■■□□ 2.23
ATG4D-212ENST00000590096 LTV1Q96GA3 475 aaPredicted RBP29.01■■■□□ 2.23
ATG4D-212ENST00000590096 BARGINQ6ZT62 677 aa29■■■□□ 2.23
ATG4D-212ENST00000590096 FAM208AQ9UK61 1670 aaKnown RBP28.99■■■□□ 2.23
ATG4D-212ENST00000590096 CNGB1Q14028 1251 aaPredicted RBP28.99■■■□□ 2.23
ATG4D-212ENST00000590096 CARD10Q9BWT7 1032 aa28.99■■■□□ 2.23
ATG4D-212ENST00000590096 NLRP2Q9NX02 1062 aa28.99■■■□□ 2.23
ATG4D-212ENST00000590096 POLKQ9UBT6 870 aa28.99■■■□□ 2.23
ATG4D-212ENST00000590096 SMG6Q86US8 1419 aaKnown RBP28.99■■■□□ 2.23
ATG4D-212ENST00000590096 INSRP06213 1382 aa28.98■■■□□ 2.23
ATG4D-212ENST00000590096 THSD7AQ9UPZ6 1657 aa28.96■■■□□ 2.23
ATG4D-212ENST00000590096 HSP90AB2PQ58FF8 381 aa28.96■■■□□ 2.23
ATG4D-212ENST00000590096 DDX10Q13206 875 aaKnown RBP28.95■■■□□ 2.22
ATG4D-212ENST00000590096 BRWD3Q6RI45 1802 aa28.94■■■□□ 2.22
ATG4D-212ENST00000590096 WNK3Q9BYP7 1800 aa28.92■■■□□ 2.22
ATG4D-212ENST00000590096 ZNF316A6NFI3 1004 aaPredicted RBP28.9■■■□□ 2.22
ATG4D-212ENST00000590096 CDCA7Q9BWT1 371 aaPredicted RBP28.9■■■□□ 2.22
ATG4D-212ENST00000590096 KRT27Q7Z3Y8 459 aa28.89■■■□□ 2.22
ATG4D-212ENST00000590096 RGPD2P0DJD1 1756 aa28.88■■■□□ 2.21
ATG4D-212ENST00000590096 PARP4Q9UKK3 1724 aaKnown RBP28.88■■■□□ 2.21
ATG4D-212ENST00000590096 PDE3BQ13370 1112 aa28.85■■■□□ 2.21
ATG4D-212ENST00000590096 DISP2A7MBM2 1401 aa28.85■■■□□ 2.21
ATG4D-212ENST00000590096 NBPF6Q5VWK0 638 aa28.84■■■□□ 2.21
ATG4D-212ENST00000590096 NBPF4Q96M43 638 aa28.84■■■□□ 2.21
ATG4D-212ENST00000590096 IL2RBP14784 551 aa28.83■■■□□ 2.21
ATG4D-212ENST00000590096 MTHFSP49914 203 aa28.83■■■□□ 2.21
ATG4D-212ENST00000590096 DDB1Q16531 1140 aa28.83■■■□□ 2.21
ATG4D-212ENST00000590096 LRRC37A3O60309 1634 aa28.83■■■□□ 2.21
ATG4D-212ENST00000590096 EIF4A2Q14240 407 aaKnown RBP28.81■■■□□ 2.2
ATG4D-212ENST00000590096 USHBP1Q8N6Y0 703 aa28.8■■■□□ 2.2
ATG4D-212ENST00000590096 EXOC5O00471 708 aa28.78■■■□□ 2.2
ATG4D-212ENST00000590096 RAPGEF4Q8WZA2 1011 aa28.76■■■□□ 2.19
ATG4D-212ENST00000590096 EYA1Q99502 592 aa28.76■■■□□ 2.19
ATG4D-212ENST00000590096 TNS2Q63HR2 1409 aa28.76■■■□□ 2.19
ATG4D-212ENST00000590096 FAM182BQ5T319 152 aa28.75■■■□□ 2.19
ATG4D-212ENST00000590096 PARD3Q8TEW0 1356 aa28.75■■■□□ 2.19
ATG4D-212ENST00000590096 PPP2R1AP30153 589 aa28.74■■■□□ 2.19
ATG4D-212ENST00000590096 MEGF6O75095 1541 aa28.73■■■□□ 2.19
ATG4D-212ENST00000590096 NCAPD2Q15021 1401 aa28.72■■■□□ 2.19
ATG4D-212ENST00000590096 TATP17735 454 aaPredicted RBP28.72■■■□□ 2.19
ATG4D-212ENST00000590096 FAM196AQ6ZSG2 479 aa28.72■■■□□ 2.19
ATG4D-212ENST00000590096 CFAP53Q96M91 514 aa28.71■■■□□ 2.19
ATG4D-212ENST00000590096 IGSF1Q8N6C5 1336 aa28.7■■■□□ 2.19
ATG4D-212ENST00000590096 OVOS2A0A0G2JMS6 1433 aa28.7■■■□□ 2.19
ATG4D-212ENST00000590096 DIAPH1O60610 1272 aaKnown RBP28.7■■■□□ 2.18
ATG4D-212ENST00000590096 IL13P35225 146 aa28.7■■■□□ 2.18
ATG4D-212ENST00000590096 RALBP1Q15311 655 aa28.7■■■□□ 2.18
ATG4D-212ENST00000590096 EP400Q96L91 3159 aa28.7■■■□□ 2.18
ATG4D-212ENST00000590096 SRCAPQ6ZRS2 3230 aa28.69■■■□□ 2.18
ATG4D-212ENST00000590096 MARCH10Q8NA82 808 aaPredicted RBP28.68■■■□□ 2.18
ATG4D-212ENST00000590096 ZCRB1Q8TBF4 217 aaKnown RBP28.67■■■□□ 2.18
ATG4D-212ENST00000590096 CCDC125Q86Z20 511 aa28.66■■■□□ 2.18
ATG4D-212ENST00000590096 COL3A1P02461 1466 aaPredicted RBP28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms