RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 KIAA0232Q92628 1395 aa21.58■■□□□ 1.04
SS18-211ENST00000578954 RGPD1P0DJD0 1748 aa21.58■■□□□ 1.04
SS18-211ENST00000578954 WDR43Q15061 677 aaKnown RBP eCLIP21.57■■□□□ 1.04
SS18-211ENST00000578954 LMO7Q8WWI1 1683 aa21.56■■□□□ 1.04
SS18-211ENST00000578954 ZC3H6P61129 1189 aaKnown RBP21.56■■□□□ 1.04
SS18-211ENST00000578954 EIF4A2Q14240 407 aaKnown RBP21.56■■□□□ 1.04
SS18-211ENST00000578954 ADAMTS8Q9UP79 889 aa21.55■■□□□ 1.04
SS18-211ENST00000578954 PLEKHG5O94827 1062 aa21.54■■□□□ 1.04
SS18-211ENST00000578954 HSPA1LP34931 641 aa21.53■■□□□ 1.04
SS18-211ENST00000578954 HAP1P54257 671 aaPredicted RBP21.52■■□□□ 1.04
SS18-211ENST00000578954 CAMTA1Q9Y6Y1 1673 aa21.51■■□□□ 1.03
SS18-211ENST00000578954 AXIN2Q9Y2T1 843 aa21.51■■□□□ 1.03
SS18-211ENST00000578954 NCAPD2Q15021 1401 aa21.51■■□□□ 1.03
SS18-211ENST00000578954 PRDM11Q9NQV5 511 aa21.5■■□□□ 1.03
SS18-211ENST00000578954 COL14A1Q05707 1796 aaKnown RBP21.5■■□□□ 1.03
SS18-211ENST00000578954 RGPD5Q99666 1765 aa21.5■■□□□ 1.03
SS18-211ENST00000578954 SPATA31A6Q5VVP1 1343 aa21.5■■□□□ 1.03
SS18-211ENST00000578954 IGSF1Q8N6C5 1336 aa21.5■■□□□ 1.03
SS18-211ENST00000578954 U2SURPO15042 1029 aaKnown RBP21.49■■□□□ 1.03
SS18-211ENST00000578954 U2AF1L5P0DN76 240 aaPredicted RBP21.49■■□□□ 1.03
SS18-211ENST00000578954 U2AF1Q01081 240 aaKnown RBP eCLIP21.49■■□□□ 1.032e-6■■■■□ 21.7
SS18-211ENST00000578954 FAM208AQ9UK61 1670 aaKnown RBP21.49■■□□□ 1.03
SS18-211ENST00000578954 ERBB3P21860 1342 aa21.49■■□□□ 1.03
SS18-211ENST00000578954 KDRP35968 1356 aa21.48■■□□□ 1.03
SS18-211ENST00000578954 ZBTB7CA1YPR0 619 aa21.48■■□□□ 1.03
SS18-211ENST00000578954 FCHSD2O94868 740 aa21.47■■□□□ 1.03
SS18-211ENST00000578954 CHRNA2Q15822 529 aa21.47■■□□□ 1.03
SS18-211ENST00000578954 EYA1Q99502 592 aa21.47■■□□□ 1.03
SS18-211ENST00000578954 FAM83GA6ND36 823 aa21.46■■□□□ 1.03
SS18-211ENST00000578954 ANKRD24Q8TF21 1146 aa21.46■■□□□ 1.03
SS18-211ENST00000578954 RSPH6AQ9H0K4 717 aa21.46■■□□□ 1.03
SS18-211ENST00000578954 COL5A2P05997 1499 aaPredicted RBP21.45■■□□□ 1.03
SS18-211ENST00000578954 PLEKHF1Q96S99 279 aa21.45■■□□□ 1.02
SS18-211ENST00000578954 RUNDC1Q96C34 613 aa21.43■■□□□ 1.02
SS18-211ENST00000578954 PNNQ9H307 717 aaKnown RBP21.43■■□□□ 1.02
SS18-211ENST00000578954 LRP6O75581 1613 aa21.42■■□□□ 1.02
SS18-211ENST00000578954 RGPD2P0DJD1 1756 aa21.42■■□□□ 1.02
SS18-211ENST00000578954 PLCH1Q4KWH8 1693 aa21.42■■□□□ 1.02
SS18-211ENST00000578954 LTV1Q96GA3 475 aaPredicted RBP21.42■■□□□ 1.02
SS18-211ENST00000578954 WDR17Q8IZU2 1322 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 NBPF6Q5VWK0 638 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 SULT6B1Q6IMI4 303 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 FBXO41Q8TF61 875 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 NBPF4Q96M43 638 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 NWD2Q9ULI1 1742 aa21.41■■□□□ 1.02
SS18-211ENST00000578954 SLIT2O94813 1529 aa21.4■■□□□ 1.02
SS18-211ENST00000578954 HMOX1P09601 288 aa21.4■■□□□ 1.02
SS18-211ENST00000578954 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
SS18-211ENST00000578954 NRAPQ86VF7 1730 aa21.4■■□□□ 1.02
SS18-211ENST00000578954 PLEKHG2Q9H7P9 1386 aa21.39■■□□□ 1.02
SS18-211ENST00000578954 PRKAR2BP31323 418 aa21.39■■□□□ 1.01
SS18-211ENST00000578954 HNRNPUQ00839 825 aaKnown RBP eCLIP21.39■■□□□ 1.01
SS18-211ENST00000578954 NCBP3Q53F19 620 aaKnown RBP21.39■■□□□ 1.01
SS18-211ENST00000578954 CCDC146Q8IYE0 955 aa21.39■■□□□ 1.01
SS18-211ENST00000578954 YTHDC1Q96MU7 727 aaKnown RBP21.39■■□□□ 1.01
SS18-211ENST00000578954 NUTM2BA6NNL0 878 aaPredicted RBP21.38■■□□□ 1.01
SS18-211ENST00000578954 NUTM2EB1AL46 878 aaPredicted RBP21.38■■□□□ 1.01
SS18-211ENST00000578954 NUTM2AQ8IVF1 878 aaPredicted RBP21.38■■□□□ 1.01
SS18-211ENST00000578954 NGEFQ8N5V2 710 aa21.38■■□□□ 1.01
SS18-211ENST00000578954 ADAMTS2O95450 1211 aa21.37■■□□□ 1.01
SS18-211ENST00000578954 ZBED9Q6R2W3 1325 aa21.36■■□□□ 1.01
SS18-211ENST00000578954 BTG4Q9NY30 223 aa21.36■■□□□ 1.01
SS18-211ENST00000578954 APAF1O14727 1248 aa21.35■■□□□ 1.01
SS18-211ENST00000578954 TCP11L2Q8N4U5 519 aa21.35■■□□□ 1.01
SS18-211ENST00000578954 MAPK8IP3Q9UPT6 1336 aa21.34■■□□□ 1.01
SS18-211ENST00000578954 CSB-PGBD3P0DP91 1061 aa21.34■■□□□ 1.01
SS18-211ENST00000578954 CRB1P82279 1406 aa21.34■■□□□ 1.01
SS18-211ENST00000578954 USHBP1Q8N6Y0 703 aa21.33■■□□□ 1.01
SS18-211ENST00000578954 PHACTR3Q96KR7 559 aa21.33■■□□□ 1.01
SS18-211ENST00000578954 CARD10Q9BWT7 1032 aa21.33■■□□□ 1.01
SS18-211ENST00000578954 NLRP2Q9NX02 1062 aa21.33■■□□□ 1.01
SS18-211ENST00000578954 NEFMP07197 916 aa21.32■■□□□ 1
SS18-211ENST00000578954 FNBP4Q8N3X1 1017 aaPredicted RBP21.32■■□□□ 1
SS18-211ENST00000578954 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
SS18-211ENST00000578954 TMPOP42166 694 aaKnown RBP21.31■■□□□ 1
SS18-211ENST00000578954 CCDC27Q2M243 656 aa21.31■■□□□ 1
SS18-211ENST00000578954 LARP1Q6PKG0 1096 aaKnown RBP21.31■■□□□ 1
SS18-211ENST00000578954 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.31■■□□□ 1
SS18-211ENST00000578954 ZNF521Q96K83 1311 aa21.3■■□□□ 1
SS18-211ENST00000578954 EVA1CP58658 441 aa21.3■■□□□ 1
SS18-211ENST00000578954 TOM1L2Q6ZVM7 507 aa21.3■■□□□ 1
SS18-211ENST00000578954 STRN4Q9NRL3 753 aa21.3■■□□□ 1
SS18-211ENST00000578954 BCL9LQ86UU0 1499 aa21.3■■□□□ 1
SS18-211ENST00000578954 NFE2L2Q16236 605 aa21.29■■□□□ 1
SS18-211ENST00000578954 MEGF6O75095 1541 aa21.28■■□□□ 1
SS18-211ENST00000578954 UNC5CLQ8IV45 518 aa21.27■■□□□ 1
SS18-211ENST00000578954 C8orf37Q96NL8 207 aa21.27■■□□□ 1
SS18-211ENST00000578954 PARP4Q9UKK3 1724 aaKnown RBP21.26■□□□□ 0.99
SS18-211ENST00000578954 GAS2L2Q8NHY3 880 aa21.26■□□□□ 0.99
SS18-211ENST00000578954 NGLY1Q96IV0 654 aa21.26■□□□□ 0.99
SS18-211ENST00000578954 OVOS2A0A0G2JMS6 1433 aa21.26■□□□□ 0.99
SS18-211ENST00000578954 DISP2A7MBM2 1401 aa21.26■□□□□ 0.99
SS18-211ENST00000578954 PKD1L3Q7Z443 1732 aa21.26■□□□□ 0.99
SS18-211ENST00000578954 MTHFSDQ2M296 383 aaKnown RBP21.25■□□□□ 0.99
SS18-211ENST00000578954 AMOTQ4VCS5 1084 aa21.25■□□□□ 0.99
SS18-211ENST00000578954 RAPGEF4Q8WZA2 1011 aa21.25■□□□□ 0.99
SS18-211ENST00000578954 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.25■□□□□ 0.993e-7■■□□□ 13.5
SS18-211ENST00000578954 RRP7AQ9Y3A4 280 aaKnown RBP21.25■□□□□ 0.99
SS18-211ENST00000578954 DLG5Q8TDM6 1919 aa21.25■□□□□ 0.99
SS18-211ENST00000578954 WNK3Q9BYP7 1800 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms