RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TIGD1Q96MW7 591 aa13.44□□□□□ -0.26
CLK3-226ENST00000569406 SLC12A5Q9H2X9 1139 aa13.44□□□□□ -0.26
CLK3-226ENST00000569406 CLTCQ00610 1675 aaKnown RBP13.44□□□□□ -0.26
CLK3-226ENST00000569406 IQSEC2Q5JU85 1478 aa13.44□□□□□ -0.26
CLK3-226ENST00000569406 NASPP49321 788 aaPredicted RBP13.43□□□□□ -0.26
CLK3-226ENST00000569406 NUTM2DQ5VT03 806 aaPredicted RBP13.43□□□□□ -0.26
CLK3-226ENST00000569406 TSPOAP1O95153 1857 aa13.43□□□□□ -0.26
CLK3-226ENST00000569406 CD163L1Q9NR16 1453 aa13.43□□□□□ -0.26
CLK3-226ENST00000569406 NSD3Q9BZ95 1437 aa13.43□□□□□ -0.26
CLK3-226ENST00000569406 BANK1Q8NDB2 785 aa13.43□□□□□ -0.26
CLK3-226ENST00000569406 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.42□□□□□ -0.26
CLK3-226ENST00000569406 ISY1Q9ULR0 285 aaKnown RBP13.42□□□□□ -0.26
CLK3-226ENST00000569406 CCDC66A2RUB6 948 aa13.42□□□□□ -0.26
CLK3-226ENST00000569406 CSPP1Q1MSJ5 1256 aa13.42□□□□□ -0.26
CLK3-226ENST00000569406 POLR3AO14802 1390 aaPredicted RBP13.42□□□□□ -0.26
CLK3-226ENST00000569406 NLRP1Q9C000 1473 aa13.41□□□□□ -0.26
CLK3-226ENST00000569406 KIF13AQ9H1H9 1805 aa13.4□□□□□ -0.26
CLK3-226ENST00000569406 LMOD3Q0VAK6 560 aa13.4□□□□□ -0.26
CLK3-226ENST00000569406 GEMIN8Q9NWZ8 242 aaKnown RBP13.4□□□□□ -0.26
CLK3-226ENST00000569406 CHGAP10645 457 aaKnown RBP13.4□□□□□ -0.27
CLK3-226ENST00000569406 SLFN5Q08AF3 891 aa13.4□□□□□ -0.27
CLK3-226ENST00000569406 CYB5RLQ6IPT4 315 aa13.4□□□□□ -0.27
CLK3-226ENST00000569406 ANTXR1Q9H6X2 564 aa13.4□□□□□ -0.27
CLK3-226ENST00000569406 AGLP35573 1532 aa13.39□□□□□ -0.27
CLK3-226ENST00000569406 CCDC146Q8IYE0 955 aa13.39□□□□□ -0.27
CLK3-226ENST00000569406 NRXN3Q9Y4C0 1643 aa13.39□□□□□ -0.27
CLK3-226ENST00000569406 GRIPAP1Q4V328 841 aa13.39□□□□□ -0.27
CLK3-226ENST00000569406 FBXO31Q5XUX0 539 aaPredicted RBP13.39□□□□□ -0.27
CLK3-226ENST00000569406 TRHP20396 242 aaPredicted RBP13.38□□□□□ -0.27
CLK3-226ENST00000569406 ALKQ9UM73 1620 aa13.38□□□□□ -0.27
CLK3-226ENST00000569406 CAPN2P17655 700 aa13.38□□□□□ -0.27
CLK3-226ENST00000569406 CRBNQ96SW2 442 aa13.38□□□□□ -0.27
CLK3-226ENST00000569406 ERICH4A6NGS2 130 aa13.38□□□□□ -0.27
CLK3-226ENST00000569406 PHF23Q9BUL5 403 aaPredicted RBP13.38□□□□□ -0.27
CLK3-226ENST00000569406 SPATA31D1Q6ZQQ2 1576 aa13.38□□□□□ -0.27
CLK3-226ENST00000569406 TMX1Q9H3N1 280 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 U2AF2P26368 475 aaKnown RBP eCLIP13.37□□□□□ -0.273e-6■■□□□ 13
CLK3-226ENST00000569406 PLCD4Q9BRC7 762 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 KIF3AQ9Y496 699 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 ANKRD26Q9UPS8 1709 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 ZNF710Q8N1W2 664 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 MPNDQ8N594 471 aa13.37□□□□□ -0.27
CLK3-226ENST00000569406 TICAM2Q86XR7 235 aa13.36□□□□□ -0.27
CLK3-226ENST00000569406 PDCL2Q8N4E4 241 aa13.36□□□□□ -0.27
CLK3-226ENST00000569406 PUS7Q96PZ0 661 aaKnown RBP13.36□□□□□ -0.27
CLK3-226ENST00000569406 KDM2BQ8NHM5 1336 aa13.36□□□□□ -0.27
CLK3-226ENST00000569406 APAF1O14727 1248 aa13.36□□□□□ -0.27
CLK3-226ENST00000569406 PPP1R9BQ96SB3 815 aa13.36□□□□□ -0.27
CLK3-226ENST00000569406 UPF2Q9HAU5 1272 aaKnown RBP13.36□□□□□ -0.27
CLK3-226ENST00000569406 COL3A1P02461 1466 aaPredicted RBP13.36□□□□□ -0.27
CLK3-226ENST00000569406 ANKRD36BQ8N2N9 1353 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 ADGRB2O60241 1585 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 DDX11L8A8MPP1 907 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 ZNF500O60304 480 aaPredicted RBP13.35□□□□□ -0.27
CLK3-226ENST00000569406 ZNF592Q92610 1267 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 ARHGEF40Q8TER5 1519 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 ZNF526Q8TF50 670 aaPredicted RBP13.35□□□□□ -0.27
CLK3-226ENST00000569406 CARD10Q9BWT7 1032 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 YY1AP1Q9H869 796 aa13.35□□□□□ -0.27
CLK3-226ENST00000569406 NOL7Q9UMY1 257 aaKnown RBP13.35□□□□□ -0.27
CLK3-226ENST00000569406 WDR43Q15061 677 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLK3-226ENST00000569406 OS9Q13438 667 aaPredicted RBP13.34□□□□□ -0.27
CLK3-226ENST00000569406 A0A1W2PP64 1363 aa13.34□□□□□ -0.27
CLK3-226ENST00000569406 A2ML1A8K2U0 1454 aa13.34□□□□□ -0.27
CLK3-226ENST00000569406 GOLGA2Q08379 1002 aa13.33□□□□□ -0.27
CLK3-226ENST00000569406 GPATCH11Q8N954 259 aa13.33□□□□□ -0.28
CLK3-226ENST00000569406 NKTRP30414 1462 aaKnown RBP13.33□□□□□ -0.28
CLK3-226ENST00000569406 YTHDC2Q9H6S0 1430 aaKnown RBP13.33□□□□□ -0.28
CLK3-226ENST00000569406 PHF14O94880 888 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 TNNT1P13805 278 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 GTF2A1P52655 376 aaPredicted RBP13.32□□□□□ -0.28
CLK3-226ENST00000569406 MYRIPQ8NFW9 859 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 ABCC11Q96J66 1382 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 FAM69CQ0P6D2 419 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 CABP2Q9NPB3 220 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 TBC1D2Q9BYX2 928 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 FBXO3Q9UK99 471 aa13.32□□□□□ -0.28
CLK3-226ENST00000569406 EGFL6Q8IUX8 553 aa13.31□□□□□ -0.28
CLK3-226ENST00000569406 CHMP5Q9NZZ3 219 aa13.31□□□□□ -0.28
CLK3-226ENST00000569406 TAOK2Q9UL54 1235 aa13.31□□□□□ -0.28
CLK3-226ENST00000569406 SEC24BO95487 1268 aa13.3□□□□□ -0.28
CLK3-226ENST00000569406 TSPYL1Q9H0U9 437 aa13.3□□□□□ -0.28
CLK3-226ENST00000569406 CALCOCO1Q9P1Z2 691 aa13.3□□□□□ -0.28
CLK3-226ENST00000569406 ZKSCAN5Q9Y2L8 839 aa13.3□□□□□ -0.28
CLK3-226ENST00000569406 CENPQQ7L2Z9 268 aaPredicted RBP13.29□□□□□ -0.28
CLK3-226ENST00000569406 TOMM22Q9NS69 142 aa13.29□□□□□ -0.28
CLK3-226ENST00000569406 BCAR3O75815 825 aa13.29□□□□□ -0.28
CLK3-226ENST00000569406 EVC2Q86UK5 1308 aa13.29□□□□□ -0.28
CLK3-226ENST00000569406 MTHFSP49914 203 aa13.29□□□□□ -0.28
CLK3-226ENST00000569406 RSPH14Q9UHP6 348 aa13.29□□□□□ -0.28
CLK3-226ENST00000569406 KIF20BQ96Q89 1820 aa13.28□□□□□ -0.28
CLK3-226ENST00000569406 CT47A1Q5JQC4 288 aaPredicted RBP13.28□□□□□ -0.28
CLK3-226ENST00000569406 SENP3Q9H4L4 574 aaPredicted RBP13.28□□□□□ -0.28
CLK3-226ENST00000569406 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.28□□□□□ -0.28
CLK3-226ENST00000569406 MED14O60244 1454 aa13.28□□□□□ -0.28
CLK3-226ENST00000569406 DLC1Q96QB1 1528 aa13.28□□□□□ -0.28
CLK3-226ENST00000569406 STK26Q9P289 416 aa13.28□□□□□ -0.28
CLK3-226ENST00000569406 MYCBPQ99417 103 aaPredicted RBP13.27□□□□□ -0.28
CLK3-226ENST00000569406 USP19O94966 1318 aa13.27□□□□□ -0.28
CLK3-226ENST00000569406 NEUROD2Q15784 382 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms