RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LARP1Q6PKG0 1096 aaKnown RBP21■□□□□ 0.95
VPS39-210ENST00000568357 ARHGEF25Q86VW2 580 aa21■□□□□ 0.95
VPS39-210ENST00000568357 EDC4Q6P2E9 1401 aaKnown RBP21■□□□□ 0.95
VPS39-210ENST00000568357 SPATA31A1Q5TZJ5 1347 aa21■□□□□ 0.95
VPS39-210ENST00000568357 AATKQ6ZMQ8 1374 aa20.99■□□□□ 0.95
VPS39-210ENST00000568357 MON2Q7Z3U7 1717 aa20.99■□□□□ 0.95
VPS39-210ENST00000568357 HSPA5P11021 654 aaKnown RBP20.99■□□□□ 0.95
VPS39-210ENST00000568357 EIF4G2P78344 907 aaKnown RBP eCLIP20.99■□□□□ 0.95
VPS39-210ENST00000568357 EZH2Q15910 746 aaKnown RBP20.99■□□□□ 0.95
VPS39-210ENST00000568357 AXIN2Q9Y2T1 843 aa20.99■□□□□ 0.95
VPS39-210ENST00000568357 RREB1Q92766 1687 aa20.99■□□□□ 0.95
VPS39-210ENST00000568357 NUP188Q5SRE5 1749 aa20.98■□□□□ 0.95
VPS39-210ENST00000568357 USP35Q9P2H5 1018 aa20.97■□□□□ 0.95
VPS39-210ENST00000568357 ANKRD36BQ8N2N9 1353 aa20.97■□□□□ 0.95
VPS39-210ENST00000568357 LMO7Q8WWI1 1683 aa20.96■□□□□ 0.95
VPS39-210ENST00000568357 COL5A2P05997 1499 aaPredicted RBP20.94■□□□□ 0.94
VPS39-210ENST00000568357 NFAT5O94916 1531 aa20.93■□□□□ 0.94
VPS39-210ENST00000568357 BARGINQ6ZT62 677 aa20.92■□□□□ 0.94
VPS39-210ENST00000568357 TCP11L2Q8N4U5 519 aa20.92■□□□□ 0.94
VPS39-210ENST00000568357 CARD14Q9BXL6 1004 aa20.92■□□□□ 0.94
VPS39-210ENST00000568357 FYB1O15117 783 aa20.91■□□□□ 0.94
VPS39-210ENST00000568357 CAMKK2Q96RR4 588 aa20.91■□□□□ 0.94
VPS39-210ENST00000568357 OVOS2A0A0J9YW53 1432 aa20.9■□□□□ 0.94
VPS39-210ENST00000568357 OVOS2Q6IE36 1432 aa20.9■□□□□ 0.94
VPS39-210ENST00000568357 POLR3GLQ9BT43 218 aa20.9■□□□□ 0.94
VPS39-210ENST00000568357 COL18A1P39060 1754 aa20.9■□□□□ 0.94
VPS39-210ENST00000568357 FBLN1P23142 703 aa20.89■□□□□ 0.93
VPS39-210ENST00000568357 COG3Q96JB2 828 aa20.89■□□□□ 0.93
VPS39-210ENST00000568357 C11orf95C9JLR9 678 aaPredicted RBP20.88■□□□□ 0.93
VPS39-210ENST00000568357 TOM1L2Q6ZVM7 507 aa20.88■□□□□ 0.93
VPS39-210ENST00000568357 GGNBP2Q9H3C7 697 aa20.88■□□□□ 0.93
VPS39-210ENST00000568357 THRAP3Q9Y2W1 955 aaKnown RBP20.88■□□□□ 0.93
VPS39-210ENST00000568357 CRB1P82279 1406 aa20.87■□□□□ 0.93
VPS39-210ENST00000568357 WDR17Q8IZU2 1322 aa20.87■□□□□ 0.93
VPS39-210ENST00000568357 TRIM37O94972 964 aa20.87■□□□□ 0.93
VPS39-210ENST00000568357 USP54Q70EL1 1684 aa20.86■□□□□ 0.93
VPS39-210ENST00000568357 CSB-PGBD3P0DP91 1061 aa20.85■□□□□ 0.93
VPS39-210ENST00000568357 PARD3Q8TEW0 1356 aa20.85■□□□□ 0.93
VPS39-210ENST00000568357 CARD10Q9BWT7 1032 aa20.83■□□□□ 0.93
VPS39-210ENST00000568357 APBA3O96018 575 aa20.82■□□□□ 0.92
VPS39-210ENST00000568357 IP6K1Q92551 441 aa20.82■□□□□ 0.92
VPS39-210ENST00000568357 MAP3K19Q56UN5 1328 aa20.81■□□□□ 0.92
VPS39-210ENST00000568357 NSD3Q9BZ95 1437 aa20.81■□□□□ 0.92
VPS39-210ENST00000568357 MYOM1P52179 1685 aa20.81■□□□□ 0.92
VPS39-210ENST00000568357 PDE3BQ13370 1112 aa20.81■□□□□ 0.92
VPS39-210ENST00000568357 ANKRD24Q8TF21 1146 aa20.8■□□□□ 0.92
VPS39-210ENST00000568357 ERBB3P21860 1342 aa20.79■□□□□ 0.92
VPS39-210ENST00000568357 ABCC6O95255 1503 aa20.79■□□□□ 0.92
VPS39-210ENST00000568357 RRS1Q15050 365 aaKnown RBP20.79■□□□□ 0.92
VPS39-210ENST00000568357 FAM196AQ6ZSG2 479 aa20.79■□□□□ 0.92
VPS39-210ENST00000568357 PANK3Q9H999 370 aa20.79■□□□□ 0.92
VPS39-210ENST00000568357 PPP1R1BQ9UD71 204 aaPredicted RBP20.79■□□□□ 0.92
VPS39-210ENST00000568357 NLRP2Q9NX02 1062 aa20.78■□□□□ 0.92
VPS39-210ENST00000568357 RGPD5Q99666 1765 aa20.77■□□□□ 0.92
VPS39-210ENST00000568357 HOXC9P31274 260 aa20.77■□□□□ 0.92
VPS39-210ENST00000568357 AMPHP49418 695 aa20.77■□□□□ 0.92
VPS39-210ENST00000568357 DDB1Q16531 1140 aa20.76■□□□□ 0.91
VPS39-210ENST00000568357 LTV1Q96GA3 475 aaPredicted RBP20.76■□□□□ 0.91
VPS39-210ENST00000568357 CASZ1Q86V15 1759 aa20.75■□□□□ 0.91
VPS39-210ENST00000568357 CDCA7Q9BWT1 371 aaPredicted RBP20.75■□□□□ 0.91
VPS39-210ENST00000568357 SPON1Q9HCB6 807 aa20.75■□□□□ 0.91
VPS39-210ENST00000568357 CGNL1Q0VF96 1302 aa20.75■□□□□ 0.91
VPS39-210ENST00000568357 CCDC7Q96M83 1385 aa20.74■□□□□ 0.91
VPS39-210ENST00000568357 LTN1O94822 1766 aa20.74■□□□□ 0.91
VPS39-210ENST00000568357 KIF7Q2M1P5 1343 aa20.74■□□□□ 0.91
VPS39-210ENST00000568357 DCAF8L1A6NGE4 600 aa20.73■□□□□ 0.91
VPS39-210ENST00000568357 KCNQ2O43526 872 aa20.73■□□□□ 0.91
VPS39-210ENST00000568357 NBPF14Q5TI25 921 aa20.73■□□□□ 0.91
VPS39-210ENST00000568357 MARCH10Q8NA82 808 aaPredicted RBP20.71■□□□□ 0.91
VPS39-210ENST00000568357 EXOC5O00471 708 aa20.7■□□□□ 0.9
VPS39-210ENST00000568357 HSP90AB2PQ58FF8 381 aa20.7■□□□□ 0.9
VPS39-210ENST00000568357 RGPD3A6NKT7 1758 aaPredicted RBP20.69■□□□□ 0.9
VPS39-210ENST00000568357 RGPD4Q7Z3J3 1758 aa20.69■□□□□ 0.9
VPS39-210ENST00000568357 ZNF784Q8NCA9 323 aaPredicted RBP20.69■□□□□ 0.9
VPS39-210ENST00000568357 EMILIN1Q9Y6C2 1016 aa20.69■□□□□ 0.9
VPS39-210ENST00000568357 PARP4Q9UKK3 1724 aaKnown RBP20.69■□□□□ 0.9
VPS39-210ENST00000568357 IL2RBP14784 551 aa20.68■□□□□ 0.9
VPS39-210ENST00000568357 RTL1A6NKG5 1358 aa20.68■□□□□ 0.9
VPS39-210ENST00000568357 KIF20BQ96Q89 1820 aa20.67■□□□□ 0.9
VPS39-210ENST00000568357 SENP3-EIF4A1A0A087X0R7 540 aa20.67■□□□□ 0.9
VPS39-210ENST00000568357 TNNT2P45379 298 aaPredicted RBP20.66■□□□□ 0.9
VPS39-210ENST00000568357 NBPF6Q5VWK0 638 aa20.66■□□□□ 0.9
VPS39-210ENST00000568357 NBPF4Q96M43 638 aa20.66■□□□□ 0.9
VPS39-210ENST00000568357 LRRC37A3O60309 1634 aa20.66■□□□□ 0.9
VPS39-210ENST00000568357 PEAK1Q9H792 1746 aa20.66■□□□□ 0.9
VPS39-210ENST00000568357 SBF2Q86WG5 1849 aa20.66■□□□□ 0.9
VPS39-210ENST00000568357 INSRP06213 1382 aa20.65■□□□□ 0.9
VPS39-210ENST00000568357 PPM1GO15355 546 aaPredicted RBP20.65■□□□□ 0.9
VPS39-210ENST00000568357 POLKQ9UBT6 870 aa20.65■□□□□ 0.9
VPS39-210ENST00000568357 UTRNP46939 3433 aa20.64■□□□□ 0.89
VPS39-210ENST00000568357 OVOS2A0A0G2JMS6 1433 aa20.64■□□□□ 0.89
VPS39-210ENST00000568357 FLT4P35916 1363 aa20.64■□□□□ 0.89
VPS39-210ENST00000568357 KIF24Q5T7B8 1368 aa20.64■□□□□ 0.89
VPS39-210ENST00000568357 KNSTRNQ9Y448 316 aa20.64■□□□□ 0.89
VPS39-210ENST00000568357 CHD4Q14839 1912 aa20.63■□□□□ 0.89
VPS39-210ENST00000568357 WASHC2AQ641Q2 1341 aa20.63■□□□□ 0.89
VPS39-210ENST00000568357 PTF1AQ7RTS3 328 aa20.63■□□□□ 0.89
VPS39-210ENST00000568357 USHBP1Q8N6Y0 703 aa20.62■□□□□ 0.89
VPS39-210ENST00000568357 ANO8Q9HCE9 1232 aaPredicted RBP20.62■□□□□ 0.89
VPS39-210ENST00000568357 PER1O15534 1290 aaPredicted RBP20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms