RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 VPS72Q15906 364 aa12.81□□□□□ -0.36
VPS35-206ENST00000565228 GJD4Q96KN9 370 aaPredicted RBP12.81□□□□□ -0.36
VPS35-206ENST00000565228 TRPC5Q9UL62 973 aaPredicted RBP12.81□□□□□ -0.36
VPS35-206ENST00000565228 AATKQ6ZMQ8 1374 aa12.81□□□□□ -0.36
VPS35-206ENST00000565228 EP400Q96L91 3159 aa12.8□□□□□ -0.36
VPS35-206ENST00000565228 ZBTB7CA1YPR0 619 aa12.8□□□□□ -0.36
VPS35-206ENST00000565228 RXRBP28702 533 aa12.8□□□□□ -0.36
VPS35-206ENST00000565228 LARP1Q6PKG0 1096 aaKnown RBP12.8□□□□□ -0.36
VPS35-206ENST00000565228 ANKRD26Q9UPS8 1709 aa12.79□□□□□ -0.36
VPS35-206ENST00000565228 RBM6P78332 1123 aaKnown RBP12.79□□□□□ -0.36
VPS35-206ENST00000565228 SPATA31A5Q5VU36 1347 aa12.79□□□□□ -0.36
VPS35-206ENST00000565228 SPATA31A7Q8IWB4 1347 aa12.79□□□□□ -0.36
VPS35-206ENST00000565228 RGPD2P0DJD1 1756 aa12.79□□□□□ -0.36
VPS35-206ENST00000565228 RRS1Q15050 365 aaKnown RBP12.78□□□□□ -0.36
VPS35-206ENST00000565228 AMER1Q5JTC6 1135 aaPredicted RBP12.78□□□□□ -0.36
VPS35-206ENST00000565228 STRN4Q9NRL3 753 aa12.78□□□□□ -0.36
VPS35-206ENST00000565228 MAP3K19Q56UN5 1328 aa12.78□□□□□ -0.36
VPS35-206ENST00000565228 CDK12Q9NYV4 1490 aaPredicted RBP12.78□□□□□ -0.36
VPS35-206ENST00000565228 THSD7AQ9UPZ6 1657 aa12.77□□□□□ -0.36
VPS35-206ENST00000565228 KCNH5Q8NCM2 988 aa12.77□□□□□ -0.37
VPS35-206ENST00000565228 SPATA31A1Q5TZJ5 1347 aa12.77□□□□□ -0.37
VPS35-206ENST00000565228 MAP2P11137 1827 aaKnown RBP12.76□□□□□ -0.37
VPS35-206ENST00000565228 ONECUT3O60422 494 aaPredicted RBP12.76□□□□□ -0.37
VPS35-206ENST00000565228 COG3Q96JB2 828 aa12.76□□□□□ -0.37
VPS35-206ENST00000565228 EMILIN1Q9Y6C2 1016 aa12.75□□□□□ -0.37
VPS35-206ENST00000565228 WNK3Q9BYP7 1800 aa12.74□□□□□ -0.37
VPS35-206ENST00000565228 FAM98CQ17RN3 349 aaKnown RBP12.74□□□□□ -0.37
VPS35-206ENST00000565228 ABCC6O95255 1503 aa12.73□□□□□ -0.37
VPS35-206ENST00000565228 HOXC9P31274 260 aa12.73□□□□□ -0.37
VPS35-206ENST00000565228 SEPT12Q8IYM1 358 aa12.73□□□□□ -0.37
VPS35-206ENST00000565228 IP6K1Q92551 441 aa12.73□□□□□ -0.37
VPS35-206ENST00000565228 USP35Q9P2H5 1018 aa12.73□□□□□ -0.37
VPS35-206ENST00000565228 FAM208AQ9UK61 1670 aaKnown RBP12.73□□□□□ -0.37
VPS35-206ENST00000565228 ERBB3P21860 1342 aa12.72□□□□□ -0.37
VPS35-206ENST00000565228 CGNL1Q0VF96 1302 aa12.72□□□□□ -0.37
VPS35-206ENST00000565228 WDR17Q8IZU2 1322 aa12.72□□□□□ -0.37
VPS35-206ENST00000565228 HSP90AB2PQ58FF8 381 aa12.72□□□□□ -0.37
VPS35-206ENST00000565228 POLKQ9UBT6 870 aa12.72□□□□□ -0.37
VPS35-206ENST00000565228 CRB1P82279 1406 aa12.71□□□□□ -0.37
VPS35-206ENST00000565228 TNNT2P45379 298 aaPredicted RBP12.71□□□□□ -0.37
VPS35-206ENST00000565228 FAM182BQ5T319 152 aa12.71□□□□□ -0.37
VPS35-206ENST00000565228 ANKRD24Q8TF21 1146 aa12.71□□□□□ -0.37
VPS35-206ENST00000565228 CCDC9Q9Y3X0 531 aaKnown RBP12.71□□□□□ -0.37
VPS35-206ENST00000565228 DISP2A7MBM2 1401 aa12.71□□□□□ -0.38
VPS35-206ENST00000565228 EVA1CP58658 441 aa12.7□□□□□ -0.38
VPS35-206ENST00000565228 LRRC37A3O60309 1634 aa12.7□□□□□ -0.38
VPS35-206ENST00000565228 PARP4Q9UKK3 1724 aaKnown RBP12.69□□□□□ -0.38
VPS35-206ENST00000565228 CC2D1BQ5T0F9 858 aaKnown RBP12.69□□□□□ -0.38
VPS35-206ENST00000565228 LTV1Q96GA3 475 aaPredicted RBP12.69□□□□□ -0.38
VPS35-206ENST00000565228 BLMP54132 1417 aaPredicted RBP12.69□□□□□ -0.38
VPS35-206ENST00000565228 SMG6Q86US8 1419 aaKnown RBP12.69□□□□□ -0.38
VPS35-206ENST00000565228 BARGINQ6ZT62 677 aa12.68□□□□□ -0.38
VPS35-206ENST00000565228 TOM1L2Q6ZVM7 507 aa12.68□□□□□ -0.38
VPS35-206ENST00000565228 TCP11L2Q8N4U5 519 aa12.68□□□□□ -0.38
VPS35-206ENST00000565228 CNGB1Q14028 1251 aaPredicted RBP12.67□□□□□ -0.38
VPS35-206ENST00000565228 NBPF6Q5VWK0 638 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 USHBP1Q8N6Y0 703 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 NBPF4Q96M43 638 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 CARD10Q9BWT7 1032 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 KNSTRNQ9Y448 316 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 SHANK3Q9BYB0 1731 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 RTL1A6NKG5 1358 aa12.67□□□□□ -0.38
VPS35-206ENST00000565228 ZEB1P37275 1124 aaPredicted RBP12.66□□□□□ -0.38
VPS35-206ENST00000565228 AMPHP49418 695 aa12.66□□□□□ -0.38
VPS35-206ENST00000565228 NSD2O96028 1365 aa12.66□□□□□ -0.38
VPS35-206ENST00000565228 INSRP06213 1382 aa12.66□□□□□ -0.38
VPS35-206ENST00000565228 MAPK8IP2Q13387 824 aaPredicted RBP12.65□□□□□ -0.38
VPS35-206ENST00000565228 MEGF6O75095 1541 aa12.65□□□□□ -0.38
VPS35-206ENST00000565228 FLT4P35916 1363 aa12.65□□□□□ -0.38
VPS35-206ENST00000565228 NPC1L1Q9UHC9 1359 aa12.65□□□□□ -0.38
VPS35-206ENST00000565228 NCAPD2Q15021 1401 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 CSB-PGBD3P0DP91 1061 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 DDX10Q13206 875 aaKnown RBP12.64□□□□□ -0.39
VPS35-206ENST00000565228 PTF1AQ7RTS3 328 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 KRT27Q7Z3Y8 459 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 MORC1Q86VD1 984 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 NLRP2Q9NX02 1062 aa12.64□□□□□ -0.39
VPS35-206ENST00000565228 RGPD1P0DJD0 1748 aa12.63□□□□□ -0.39
VPS35-206ENST00000565228 PPM1GO15355 546 aaPredicted RBP12.63□□□□□ -0.39
VPS35-206ENST00000565228 EIF4A2Q14240 407 aaKnown RBP12.63□□□□□ -0.39
VPS35-206ENST00000565228 MARCH10Q8NA82 808 aaPredicted RBP12.63□□□□□ -0.39
VPS35-206ENST00000565228 THRAP3Q9Y2W1 955 aaKnown RBP12.63□□□□□ -0.39
VPS35-206ENST00000565228 COL3A1P02461 1466 aaPredicted RBP12.63□□□□□ -0.39
VPS35-206ENST00000565228 SBF2Q86WG5 1849 aa12.62□□□□□ -0.39
VPS35-206ENST00000565228 KIF24Q5T7B8 1368 aa12.62□□□□□ -0.39
VPS35-206ENST00000565228 EYA1Q99502 592 aa12.62□□□□□ -0.39
VPS35-206ENST00000565228 MTHFSP49914 203 aa12.61□□□□□ -0.39
VPS35-206ENST00000565228 TNS1Q9HBL0 1735 aaKnown RBP12.6□□□□□ -0.39
VPS35-206ENST00000565228 A0A0G2JS52 829 aa12.6□□□□□ -0.39
VPS35-206ENST00000565228 IL13P35225 146 aa12.6□□□□□ -0.39
VPS35-206ENST00000565228 MYT1Q01538 1121 aa12.6□□□□□ -0.39
VPS35-206ENST00000565228 TNS2Q63HR2 1409 aa12.59□□□□□ -0.39
VPS35-206ENST00000565228 IL2RBP14784 551 aa12.58□□□□□ -0.4
VPS35-206ENST00000565228 AEBP1Q8IUX7 1158 aa12.58□□□□□ -0.4
VPS35-206ENST00000565228 PARD3Q8TEW0 1356 aa12.57□□□□□ -0.4
VPS35-206ENST00000565228 OVOS2A0A0G2JMS6 1433 aa12.57□□□□□ -0.4
VPS35-206ENST00000565228 PPP2R1AP30153 589 aa12.57□□□□□ -0.4
VPS35-206ENST00000565228 DDB1Q16531 1140 aa12.57□□□□□ -0.4
VPS35-206ENST00000565228 IGSF1Q8N6C5 1336 aa12.57□□□□□ -0.4
VPS35-206ENST00000565228 PKD1L3Q7Z443 1732 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms