RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 CGNL1Q0VF96 1302 aa23.89■■□□□ 1.42
USB1-209ENST00000564387 WASHC2AQ641Q2 1341 aa23.89■■□□□ 1.42
USB1-209ENST00000564387 SOX12O15370 315 aa23.89■■□□□ 1.41
USB1-209ENST00000564387 LTN1O94822 1766 aa23.88■■□□□ 1.41
USB1-209ENST00000564387 EVA1CP58658 441 aa23.87■■□□□ 1.41
USB1-209ENST00000564387 LARP1Q6PKG0 1096 aaKnown RBP23.87■■□□□ 1.41
USB1-209ENST00000564387 STRN4Q9NRL3 753 aa23.87■■□□□ 1.41
USB1-209ENST00000564387 CCDC9Q9Y3X0 531 aaKnown RBP23.87■■□□□ 1.41
USB1-209ENST00000564387 RGPD5Q99666 1765 aa23.86■■□□□ 1.41
USB1-209ENST00000564387 WDR17Q8IZU2 1322 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 CRB1P82279 1406 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 THSD7AQ9UPZ6 1657 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 ZBTB7CA1YPR0 619 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 BARGINQ6ZT62 677 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 IP6K1Q92551 441 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 MAP3K19Q56UN5 1328 aa23.84■■□□□ 1.41
USB1-209ENST00000564387 SEPT12Q8IYM1 358 aa23.83■■□□□ 1.41
USB1-209ENST00000564387 THRAP3Q9Y2W1 955 aaKnown RBP23.83■■□□□ 1.41
USB1-209ENST00000564387 BLMP54132 1417 aaPredicted RBP23.83■■□□□ 1.4
USB1-209ENST00000564387 ANKRD26Q9UPS8 1709 aa23.82■■□□□ 1.4
USB1-209ENST00000564387 NSD2O96028 1365 aa23.82■■□□□ 1.4
USB1-209ENST00000564387 PER1O15534 1290 aaPredicted RBP23.82■■□□□ 1.4
USB1-209ENST00000564387 FBLN1P23142 703 aa23.82■■□□□ 1.4
USB1-209ENST00000564387 ZEB1P37275 1124 aaPredicted RBP23.82■■□□□ 1.4
USB1-209ENST00000564387 FAM98CQ17RN3 349 aaKnown RBP23.81■■□□□ 1.4
USB1-209ENST00000564387 ERBB3P21860 1342 aa23.81■■□□□ 1.4
USB1-209ENST00000564387 RTL1A6NKG5 1358 aa23.8■■□□□ 1.4
USB1-209ENST00000564387 KIF24Q5T7B8 1368 aa23.8■■□□□ 1.4
USB1-209ENST00000564387 TCP11L2Q8N4U5 519 aa23.8■■□□□ 1.4
USB1-209ENST00000564387 BRWD3Q6RI45 1802 aa23.8■■□□□ 1.4
USB1-209ENST00000564387 HOXC9P31274 260 aa23.78■■□□□ 1.4
USB1-209ENST00000564387 AMER1Q5JTC6 1135 aaPredicted RBP23.78■■□□□ 1.4
USB1-209ENST00000564387 CARD10Q9BWT7 1032 aa23.78■■□□□ 1.4
USB1-209ENST00000564387 KNSTRNQ9Y448 316 aa23.77■■□□□ 1.4
USB1-209ENST00000564387 EP400Q96L91 3159 aa23.76■■□□□ 1.39
USB1-209ENST00000564387 RRS1Q15050 365 aaKnown RBP23.76■■□□□ 1.39
USB1-209ENST00000564387 TOM1L2Q6ZVM7 507 aa23.76■■□□□ 1.39
USB1-209ENST00000564387 USP35Q9P2H5 1018 aa23.75■■□□□ 1.39
USB1-209ENST00000564387 PEAK1Q9H792 1746 aa23.74■■□□□ 1.39
USB1-209ENST00000564387 AMPHP49418 695 aa23.74■■□□□ 1.39
USB1-209ENST00000564387 ANKRD24Q8TF21 1146 aa23.74■■□□□ 1.39
USB1-209ENST00000564387 UPF1Q92900 1129 aaKnown RBP eCLIP23.73■■□□□ 1.39
USB1-209ENST00000564387 NPC1L1Q9UHC9 1359 aa23.73■■□□□ 1.39
USB1-209ENST00000564387 PARP4Q9UKK3 1724 aaKnown RBP23.73■■□□□ 1.39
USB1-209ENST00000564387 KRT27Q7Z3Y8 459 aa23.72■■□□□ 1.39
USB1-209ENST00000564387 FLT4P35916 1363 aa23.72■■□□□ 1.39
USB1-209ENST00000564387 DISP2A7MBM2 1401 aa23.72■■□□□ 1.39
USB1-209ENST00000564387 FAM208AQ9UK61 1670 aaKnown RBP23.72■■□□□ 1.39
USB1-209ENST00000564387 INSRP06213 1382 aa23.71■■□□□ 1.39
USB1-209ENST00000564387 CSB-PGBD3P0DP91 1061 aa23.71■■□□□ 1.39
USB1-209ENST00000564387 POLKQ9UBT6 870 aa23.71■■□□□ 1.39
USB1-209ENST00000564387 MAP2P11137 1827 aaKnown RBP23.7■■□□□ 1.39
USB1-209ENST00000564387 WNK3Q9BYP7 1800 aa23.7■■□□□ 1.39
USB1-209ENST00000564387 CDCA7Q9BWT1 371 aaPredicted RBP23.7■■□□□ 1.38
USB1-209ENST00000564387 EMILIN1Q9Y6C2 1016 aa23.7■■□□□ 1.38
USB1-209ENST00000564387 SMG6Q86US8 1419 aaKnown RBP23.68■■□□□ 1.38
USB1-209ENST00000564387 HSP90AB2PQ58FF8 381 aa23.68■■□□□ 1.38
USB1-209ENST00000564387 NLRP2Q9NX02 1062 aa23.67■■□□□ 1.38
USB1-209ENST00000564387 A0A0G2JS52 829 aa23.66■■□□□ 1.38
USB1-209ENST00000564387 MYT1Q01538 1121 aa23.66■■□□□ 1.38
USB1-209ENST00000564387 MORC1Q86VD1 984 aa23.66■■□□□ 1.38
USB1-209ENST00000564387 LRRC37A3O60309 1634 aa23.65■■□□□ 1.38
USB1-209ENST00000564387 LTV1Q96GA3 475 aaPredicted RBP23.63■■□□□ 1.37
USB1-209ENST00000564387 TNNT2P45379 298 aaPredicted RBP23.62■■□□□ 1.37
USB1-209ENST00000564387 CCDC125Q86Z20 511 aa23.62■■□□□ 1.37
USB1-209ENST00000564387 RGPD2P0DJD1 1756 aa23.62■■□□□ 1.37
USB1-209ENST00000564387 NCAPD2Q15021 1401 aa23.61■■□□□ 1.37
USB1-209ENST00000564387 NBPF6Q5VWK0 638 aa23.61■■□□□ 1.37
USB1-209ENST00000564387 NBPF4Q96M43 638 aa23.61■■□□□ 1.37
USB1-209ENST00000564387 IL2RBP14784 551 aa23.6■■□□□ 1.37
USB1-209ENST00000564387 PDE3BQ13370 1112 aa23.6■■□□□ 1.37
USB1-209ENST00000564387 DDB1Q16531 1140 aa23.6■■□□□ 1.37
USB1-209ENST00000564387 PPM1GO15355 546 aaPredicted RBP23.58■■□□□ 1.37
USB1-209ENST00000564387 CC2D1BQ5T0F9 858 aaKnown RBP23.58■■□□□ 1.37
USB1-209ENST00000564387 FAM196AQ6ZSG2 479 aa23.58■■□□□ 1.37
USB1-209ENST00000564387 BCL9O00512 1426 aa23.58■■□□□ 1.36
USB1-209ENST00000564387 FAM182BQ5T319 152 aa23.57■■□□□ 1.36
USB1-209ENST00000564387 TNS2Q63HR2 1409 aa23.57■■□□□ 1.36
USB1-209ENST00000564387 EXOC5O00471 708 aa23.56■■□□□ 1.36
USB1-209ENST00000564387 EIF4A2Q14240 407 aaKnown RBP23.54■■□□□ 1.36
USB1-209ENST00000564387 MARCH10Q8NA82 808 aaPredicted RBP23.54■■□□□ 1.36
USB1-209ENST00000564387 OVOS2A0A0G2JMS6 1433 aa23.53■■□□□ 1.36
USB1-209ENST00000564387 EYA1Q99502 592 aa23.52■■□□□ 1.36
USB1-209ENST00000564387 MEGF6O75095 1541 aa23.52■■□□□ 1.36
USB1-209ENST00000564387 MTHFSP49914 203 aa23.51■■□□□ 1.35
USB1-209ENST00000564387 USHBP1Q8N6Y0 703 aa23.5■■□□□ 1.35
USB1-209ENST00000564387 RGPD1P0DJD0 1748 aa23.5■■□□□ 1.35
USB1-209ENST00000564387 IGSF1Q8N6C5 1336 aa23.49■■□□□ 1.35
USB1-209ENST00000564387 TNS1Q9HBL0 1735 aaKnown RBP23.48■■□□□ 1.35
USB1-209ENST00000564387 PLEKHG2Q9H7P9 1386 aa23.48■■□□□ 1.35
USB1-209ENST00000564387 SHANK3Q9BYB0 1731 aa23.47■■□□□ 1.35
USB1-209ENST00000564387 SBF2Q86WG5 1849 aa23.47■■□□□ 1.35
USB1-209ENST00000564387 IL13P35225 146 aa23.47■■□□□ 1.35
USB1-209ENST00000564387 ZCRB1Q8TBF4 217 aaKnown RBP23.46■■□□□ 1.35
USB1-209ENST00000564387 RAPGEF4Q8WZA2 1011 aa23.46■■□□□ 1.35
USB1-209ENST00000564387 TRIM37O94972 964 aa23.45■■□□□ 1.34
USB1-209ENST00000564387 DDX10Q13206 875 aaKnown RBP23.45■■□□□ 1.34
USB1-209ENST00000564387 TATP17735 454 aaPredicted RBP23.44■■□□□ 1.34
USB1-209ENST00000564387 COL3A1P02461 1466 aaPredicted RBP23.43■■□□□ 1.34
USB1-209ENST00000564387 PARD3Q8TEW0 1356 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms