RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 ARHGAP9Q9BRR9 750 aa8.68□□□□□ -1.02
LRRC28-218ENST00000560236 FAM117AQ9C073 453 aa8.68□□□□□ -1.02
LRRC28-218ENST00000560236 TSEN34Q9BSV6 310 aaKnown RBP8.67□□□□□ -1.02
LRRC28-218ENST00000560236 NR6A1Q15406 480 aa8.66□□□□□ -1.02
LRRC28-218ENST00000560236 PPP1R26Q5T8A7 1209 aaPredicted RBP8.66□□□□□ -1.02
LRRC28-218ENST00000560236 FBXO31Q5XUX0 539 aaPredicted RBP8.66□□□□□ -1.02
LRRC28-218ENST00000560236 ZBTB33Q86T24 672 aa8.66□□□□□ -1.02
LRRC28-218ENST00000560236 SLC10A4Q96EP9 437 aa8.66□□□□□ -1.02
LRRC28-218ENST00000560236 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.66□□□□□ -1.02
LRRC28-218ENST00000560236 PGPEP1Q9NXJ5 209 aa8.66□□□□□ -1.02
LRRC28-218ENST00000560236 SOS2Q07890 1332 aaPredicted RBP8.65□□□□□ -1.02
LRRC28-218ENST00000560236 ZC3H4Q9UPT8 1303 aaKnown RBP8.65□□□□□ -1.02
LRRC28-218ENST00000560236 AP1G2O75843 785 aa8.65□□□□□ -1.02
LRRC28-218ENST00000560236 PPP2R2DQ66LE6 453 aa8.65□□□□□ -1.02
LRRC28-218ENST00000560236 CDV3Q9UKY7 258 aaKnown RBP8.65□□□□□ -1.02
LRRC28-218ENST00000560236 VSIG8P0DPA2 414 aa8.64□□□□□ -1.03
LRRC28-218ENST00000560236 LORP23490 312 aaPredicted RBP8.64□□□□□ -1.03
LRRC28-218ENST00000560236 KCTD15Q96SI1 283 aaPredicted RBP8.64□□□□□ -1.03
LRRC28-218ENST00000560236 DNMT3LQ9UJW3 386 aa8.64□□□□□ -1.03
LRRC28-218ENST00000560236 PPFIA3O75145 1194 aa8.63□□□□□ -1.03
LRRC28-218ENST00000560236 PTK2Q05397 1052 aa8.63□□□□□ -1.03
LRRC28-218ENST00000560236 BCANQ96GW7 911 aa8.63□□□□□ -1.03
LRRC28-218ENST00000560236 DHX9Q08211 1270 aaKnown RBP8.62□□□□□ -1.03
LRRC28-218ENST00000560236 CBLBQ13191 982 aa8.62□□□□□ -1.03
LRRC28-218ENST00000560236 TTLL8A6PVC2 850 aa8.61□□□□□ -1.03
LRRC28-218ENST00000560236 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.61□□□□□ -1.03
LRRC28-218ENST00000560236 Q6ZVU0 165 aa8.61□□□□□ -1.03
LRRC28-218ENST00000560236 GPSM3Q9Y4H4 160 aa8.61□□□□□ -1.03
LRRC28-218ENST00000560236 PNMA1Q8ND90 353 aa8.6□□□□□ -1.03
LRRC28-218ENST00000560236 ADAM32Q8TC27 787 aa8.6□□□□□ -1.03
LRRC28-218ENST00000560236 OCSTAMPQ9BR26 566 aa8.6□□□□□ -1.03
LRRC28-218ENST00000560236 INTS6LQ5JSJ4 861 aaKnown RBP8.59□□□□□ -1.03
LRRC28-218ENST00000560236 EPS8L1Q8TE68 723 aa8.59□□□□□ -1.03
LRRC28-218ENST00000560236 FIGNL2A6NMB9 653 aa8.58□□□□□ -1.04
LRRC28-218ENST00000560236 SPINT1O43278 529 aa8.58□□□□□ -1.04
LRRC28-218ENST00000560236 USP17L8P0C7I0 530 aa8.58□□□□□ -1.04
LRRC28-218ENST00000560236 PTSQ03393 145 aa8.57□□□□□ -1.04
LRRC28-218ENST00000560236 NBPF20Q3BBV1 942 aa8.57□□□□□ -1.04
LRRC28-218ENST00000560236 HMX1Q9NP08 348 aaPredicted RBP8.57□□□□□ -1.04
LRRC28-218ENST00000560236 AGBL1Q96MI9 1066 aa8.56□□□□□ -1.04
LRRC28-218ENST00000560236 RFC5P40937 340 aa8.55□□□□□ -1.04
LRRC28-218ENST00000560236 RAB15P59190 212 aa8.55□□□□□ -1.04
LRRC28-218ENST00000560236 RELBQ01201 579 aa8.55□□□□□ -1.04
LRRC28-218ENST00000560236 DZIP3Q86Y13 1208 aaKnown RBP8.55□□□□□ -1.04
LRRC28-218ENST00000560236 CTSOP43234 321 aaPredicted RBP8.53□□□□□ -1.04
LRRC28-218ENST00000560236 CCDC155Q8N6L0 562 aa8.53□□□□□ -1.04
LRRC28-218ENST00000560236 PCMTD1Q96MG8 357 aaPredicted RBP8.53□□□□□ -1.04
LRRC28-218ENST00000560236 INSM2Q96T92 566 aaPredicted RBP8.53□□□□□ -1.04
LRRC28-218ENST00000560236 TMPRSS4Q9NRS4 437 aa8.53□□□□□ -1.04
LRRC28-218ENST00000560236 ZNF784Q8NCA9 323 aaPredicted RBP8.52□□□□□ -1.05
LRRC28-218ENST00000560236 POLMQ9NP87 494 aaPredicted RBP8.52□□□□□ -1.05
LRRC28-218ENST00000560236 TMEM259Q4ZIN3 620 aa8.51□□□□□ -1.05
LRRC28-218ENST00000560236 ZNF395Q9H8N7 513 aaPredicted RBP8.51□□□□□ -1.05
LRRC28-218ENST00000560236 GOPCQ9HD26 462 aa8.51□□□□□ -1.05
LRRC28-218ENST00000560236 ERVH48-1M5A8F1 160 aa8.5□□□□□ -1.05
LRRC28-218ENST00000560236 GPR161Q8N6U8 529 aaKnown RBP8.5□□□□□ -1.05
LRRC28-218ENST00000560236 SLC35F4A4IF30 521 aa8.49□□□□□ -1.05
LRRC28-218ENST00000560236 ADH1AP07327 375 aa8.49□□□□□ -1.05
LRRC28-218ENST00000560236 NANOS1Q8WY41 292 aaKnown RBP8.49□□□□□ -1.05
LRRC28-218ENST00000560236 CNTNAP3BQ96NU0 1288 aa8.49□□□□□ -1.05
LRRC28-218ENST00000560236 TRIM34Q9BYJ4 488 aa8.49□□□□□ -1.05
LRRC28-218ENST00000560236 CNTNAP3Q9BZ76 1288 aa8.49□□□□□ -1.05
LRRC28-218ENST00000560236 ESPNB1AK53 854 aa8.48□□□□□ -1.05
LRRC28-218ENST00000560236 LILRA1O75019 489 aa8.48□□□□□ -1.05
LRRC28-218ENST00000560236 KRT76Q01546 638 aa8.48□□□□□ -1.05
LRRC28-218ENST00000560236 RNF217Q8TC41 542 aa8.48□□□□□ -1.05
LRRC28-218ENST00000560236 ITGA6P23229 1130 aa8.47□□□□□ -1.05
LRRC28-218ENST00000560236 ADD1P35611 737 aaKnown RBP8.47□□□□□ -1.05
LRRC28-218ENST00000560236 NEUROD2Q15784 382 aa8.47□□□□□ -1.05
LRRC28-218ENST00000560236 SEPT12Q8IYM1 358 aa8.47□□□□□ -1.05
LRRC28-218ENST00000560236 TRIM52Q96A61 297 aa8.47□□□□□ -1.05
LRRC28-218ENST00000560236 COL25A1Q9BXS0 654 aaPredicted RBP8.47□□□□□ -1.05
LRRC28-218ENST00000560236 ZBBXA8MT70 800 aa8.46□□□□□ -1.06
LRRC28-218ENST00000560236 PTGIRP43119 386 aa8.46□□□□□ -1.06
LRRC28-218ENST00000560236 VWA5B2Q8N398 1253 aa8.46□□□□□ -1.06
LRRC28-218ENST00000560236 IL27Q8NEV9 243 aa8.46□□□□□ -1.06
LRRC28-218ENST00000560236 CYLDQ9NQC7 956 aa8.46□□□□□ -1.06
LRRC28-218ENST00000560236 CDC14CA4D256 554 aa8.45□□□□□ -1.06
LRRC28-218ENST00000560236 PCDHB9Q9Y5E1 797 aa8.45□□□□□ -1.06
LRRC28-218ENST00000560236 SV2AQ7L0J3 742 aa8.44□□□□□ -1.06
LRRC28-218ENST00000560236 KDF1Q8NAX2 398 aaPredicted RBP8.44□□□□□ -1.06
LRRC28-218ENST00000560236 SLC24A1O60721 1099 aa8.43□□□□□ -1.06
LRRC28-218ENST00000560236 GIGYF1O75420 1035 aaPredicted RBP8.43□□□□□ -1.06
LRRC28-218ENST00000560236 RNFT1Q5M7Z0 435 aa8.43□□□□□ -1.06
LRRC28-218ENST00000560236 FOXD4L5Q5VV16 416 aaPredicted RBP8.43□□□□□ -1.06
LRRC28-218ENST00000560236 SENP3-EIF4A1A0A087X0R7 540 aa8.42□□□□□ -1.06
LRRC28-218ENST00000560236 FBXO45P0C2W1 286 aa8.42□□□□□ -1.06
LRRC28-218ENST00000560236 LYSMD3Q7Z3D4 306 aa8.42□□□□□ -1.06
LRRC28-218ENST00000560236 GJD4Q96KN9 370 aaPredicted RBP8.42□□□□□ -1.06
LRRC28-218ENST00000560236 ATP5J2-PTCD1G3V325 749 aa8.4□□□□□ -1.06
LRRC28-218ENST00000560236 PRICKLE2Q7Z3G6 844 aa8.4□□□□□ -1.06
LRRC28-218ENST00000560236 CCDC125Q86Z20 511 aa8.4□□□□□ -1.06
LRRC28-218ENST00000560236 RNF144AP50876 292 aaPredicted RBP8.39□□□□□ -1.07
LRRC28-218ENST00000560236 KCNMA1Q12791 1236 aa8.39□□□□□ -1.07
LRRC28-218ENST00000560236 SVOPQ8N4V2 548 aa8.39□□□□□ -1.07
LRRC28-218ENST00000560236 ADAMTS8Q9UP79 889 aa8.39□□□□□ -1.07
LRRC28-218ENST00000560236 MEN1O00255 615 aa8.38□□□□□ -1.07
LRRC28-218ENST00000560236 SLURP2P0DP57 97 aa8.38□□□□□ -1.07
LRRC28-218ENST00000560236 RNF20Q5VTR2 975 aa8.38□□□□□ -1.07
LRRC28-218ENST00000560236 ZNF385CQ66K41 422 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms