RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 AATKQ6ZMQ8 1374 aa12.98□□□□□ -0.33
CUX1-216ENST00000558469 ZBTB7CA1YPR0 619 aa12.98□□□□□ -0.33
CUX1-216ENST00000558469 PPM1GO15355 546 aaPredicted RBP12.98□□□□□ -0.33
CUX1-216ENST00000558469 ZC3H6P61129 1189 aaKnown RBP12.98□□□□□ -0.33
CUX1-216ENST00000558469 ZNF219Q9P2Y4 722 aaPredicted RBP12.98□□□□□ -0.33
CUX1-216ENST00000558469 EMILIN1Q9Y6C2 1016 aa12.98□□□□□ -0.33
CUX1-216ENST00000558469 NUTM2BA6NNL0 878 aaPredicted RBP12.97□□□□□ -0.33
CUX1-216ENST00000558469 NUTM2EB1AL46 878 aaPredicted RBP12.97□□□□□ -0.33
CUX1-216ENST00000558469 MTHFSP49914 203 aa12.97□□□□□ -0.33
CUX1-216ENST00000558469 NUTM2AQ8IVF1 878 aaPredicted RBP12.97□□□□□ -0.33
CUX1-216ENST00000558469 POLKQ9UBT6 870 aa12.97□□□□□ -0.33
CUX1-216ENST00000558469 COL18A1P39060 1754 aa12.97□□□□□ -0.33
CUX1-216ENST00000558469 MAP3K19Q56UN5 1328 aa12.96□□□□□ -0.33
CUX1-216ENST00000558469 AMPHP49418 695 aa12.95□□□□□ -0.34
CUX1-216ENST00000558469 ARHGEF25Q86VW2 580 aa12.95□□□□□ -0.34
CUX1-216ENST00000558469 SMG6Q86US8 1419 aaKnown RBP12.95□□□□□ -0.34
CUX1-216ENST00000558469 KIAA0232Q92628 1395 aa12.94□□□□□ -0.34
CUX1-216ENST00000558469 COL14A1Q05707 1796 aaKnown RBP12.94□□□□□ -0.34
CUX1-216ENST00000558469 RGPD2P0DJD1 1756 aa12.94□□□□□ -0.34
CUX1-216ENST00000558469 CPDO75976 1380 aa12.94□□□□□ -0.34
CUX1-216ENST00000558469 SPATA31A6Q5VVP1 1343 aa12.93□□□□□ -0.34
CUX1-216ENST00000558469 PLCH1Q4KWH8 1693 aa12.93□□□□□ -0.34
CUX1-216ENST00000558469 CDK12Q9NYV4 1490 aaPredicted RBP12.93□□□□□ -0.34
CUX1-216ENST00000558469 ADAMTS2O95450 1211 aa12.93□□□□□ -0.34
CUX1-216ENST00000558469 CHRNA2Q15822 529 aa12.93□□□□□ -0.34
CUX1-216ENST00000558469 PRDM11Q9NQV5 511 aa12.93□□□□□ -0.34
CUX1-216ENST00000558469 HOXC9P31274 260 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 IP6K1Q92551 441 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 CFAP53Q96M91 514 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 LMO7Q8WWI1 1683 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 RTL1A6NKG5 1358 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 FLT4P35916 1363 aa12.92□□□□□ -0.34
CUX1-216ENST00000558469 FAM83GA6ND36 823 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 CCER2I3L3R5 266 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 HSP90AB2PQ58FF8 381 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 MRS2Q9HD23 443 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 ABCC6O95255 1503 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 KIF24Q5T7B8 1368 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 LRP6O75581 1613 aa12.91□□□□□ -0.34
CUX1-216ENST00000558469 AXIN2Q9Y2T1 843 aa12.9□□□□□ -0.34
CUX1-216ENST00000558469 NWD2Q9ULI1 1742 aa12.9□□□□□ -0.34
CUX1-216ENST00000558469 COL3A1P02461 1466 aaPredicted RBP12.9□□□□□ -0.34
CUX1-216ENST00000558469 LTV1Q96GA3 475 aaPredicted RBP12.89□□□□□ -0.35
CUX1-216ENST00000558469 INSRP06213 1382 aa12.89□□□□□ -0.35
CUX1-216ENST00000558469 FAM208AQ9UK61 1670 aaKnown RBP12.89□□□□□ -0.35
CUX1-216ENST00000558469 CAMTA1Q9Y6Y1 1673 aa12.89□□□□□ -0.35
CUX1-216ENST00000558469 BLMP54132 1417 aaPredicted RBP12.88□□□□□ -0.35
CUX1-216ENST00000558469 DIAPH1O60610 1272 aaKnown RBP12.88□□□□□ -0.35
CUX1-216ENST00000558469 ABCB7O75027 752 aa12.88□□□□□ -0.35
CUX1-216ENST00000558469 MEX3CQ5U5Q3 659 aaKnown RBP12.88□□□□□ -0.35
CUX1-216ENST00000558469 C8orf37Q96NL8 207 aa12.88□□□□□ -0.35
CUX1-216ENST00000558469 NRAPQ86VF7 1730 aa12.88□□□□□ -0.35
CUX1-216ENST00000558469 EIF4A2Q14240 407 aaKnown RBP12.87□□□□□ -0.35
CUX1-216ENST00000558469 ANKRD24Q8TF21 1146 aa12.87□□□□□ -0.35
CUX1-216ENST00000558469 NGLY1Q96IV0 654 aa12.87□□□□□ -0.35
CUX1-216ENST00000558469 BTG4Q9NY30 223 aa12.87□□□□□ -0.35
CUX1-216ENST00000558469 RGPD1P0DJD0 1748 aa12.87□□□□□ -0.35
CUX1-216ENST00000558469 COL5A2P05997 1499 aaPredicted RBP12.85□□□□□ -0.35
CUX1-216ENST00000558469 U2SURPO15042 1029 aaKnown RBP12.85□□□□□ -0.35
CUX1-216ENST00000558469 IL13P35225 146 aa12.85□□□□□ -0.35
CUX1-216ENST00000558469 EVA1CP58658 441 aa12.85□□□□□ -0.35
CUX1-216ENST00000558469 STRN4Q9NRL3 753 aa12.85□□□□□ -0.35
CUX1-216ENST00000558469 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
CUX1-216ENST00000558469 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.85□□□□□ -0.35
CUX1-216ENST00000558469 CSB-PGBD3P0DP91 1061 aa12.84□□□□□ -0.35
CUX1-216ENST00000558469 WDR43Q15061 677 aaKnown RBP eCLIP12.84□□□□□ -0.35
CUX1-216ENST00000558469 ILDR1Q86SU0 546 aaPredicted RBP12.84□□□□□ -0.35
CUX1-216ENST00000558469 FAM9BQ8IZU0 186 aa12.84□□□□□ -0.35
CUX1-216ENST00000558469 PNISRQ8TF01 805 aaKnown RBP12.84□□□□□ -0.35
CUX1-216ENST00000558469 ERBB3P21860 1342 aa12.84□□□□□ -0.35
CUX1-216ENST00000558469 SLIT2O94813 1529 aa12.83□□□□□ -0.35
CUX1-216ENST00000558469 ATF5Q9Y2D1 282 aaPredicted RBP12.83□□□□□ -0.36
CUX1-216ENST00000558469 U2AF1L5P0DN76 240 aaPredicted RBP12.82□□□□□ -0.36
CUX1-216ENST00000558469 U2AF1Q01081 240 aaKnown RBP eCLIP12.82□□□□□ -0.36
CUX1-216ENST00000558469 EYA1Q99502 592 aa12.82□□□□□ -0.36
CUX1-216ENST00000558469 NLRP2Q9NX02 1062 aa12.82□□□□□ -0.36
CUX1-216ENST00000558469 ADAMTS8Q9UP79 889 aa12.82□□□□□ -0.36
CUX1-216ENST00000558469 WDR17Q8IZU2 1322 aa12.82□□□□□ -0.36
CUX1-216ENST00000558469 NBPF6Q5VWK0 638 aa12.81□□□□□ -0.36
CUX1-216ENST00000558469 LARP1Q6PKG0 1096 aaKnown RBP12.81□□□□□ -0.36
CUX1-216ENST00000558469 TOM1L2Q6ZVM7 507 aa12.81□□□□□ -0.36
CUX1-216ENST00000558469 FNBP4Q8N3X1 1017 aaPredicted RBP12.81□□□□□ -0.36
CUX1-216ENST00000558469 USHBP1Q8N6Y0 703 aa12.81□□□□□ -0.36
CUX1-216ENST00000558469 NBPF4Q96M43 638 aa12.81□□□□□ -0.36
CUX1-216ENST00000558469 AFF2P51816 1311 aa12.81□□□□□ -0.36
CUX1-216ENST00000558469 BCL9LQ86UU0 1499 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 HMOX1P09601 288 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 UNC5CLQ8IV45 518 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 USP21Q9UK80 565 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 WNK3Q9BYP7 1800 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 IGSF1Q8N6C5 1336 aa12.8□□□□□ -0.36
CUX1-216ENST00000558469 CRB1P82279 1406 aa12.79□□□□□ -0.36
CUX1-216ENST00000558469 SULT6B1Q6IMI4 303 aa12.79□□□□□ -0.36
CUX1-216ENST00000558469 AEBP1Q8IUX7 1158 aa12.79□□□□□ -0.36
CUX1-216ENST00000558469 CARD10Q9BWT7 1032 aa12.78□□□□□ -0.36
CUX1-216ENST00000558469 USP35Q9P2H5 1018 aa12.78□□□□□ -0.36
CUX1-216ENST00000558469 CCDC9Q9Y3X0 531 aaKnown RBP12.78□□□□□ -0.36
CUX1-216ENST00000558469 PARP4Q9UKK3 1724 aaKnown RBP12.78□□□□□ -0.36
CUX1-216ENST00000558469 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms