RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 COL5A2P05997 1499 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-217ENST00000555116 STRN4Q9NRL3 753 aa19.6■□□□□ 0.73
SHMT2-217ENST00000555116 AXIN2Q9Y2T1 843 aa19.6■□□□□ 0.73
SHMT2-217ENST00000555116 CCDC9Q9Y3X0 531 aaKnown RBP19.6■□□□□ 0.73
SHMT2-217ENST00000555116 CGNL1Q0VF96 1302 aa19.6■□□□□ 0.73
SHMT2-217ENST00000555116 SPATA31A5Q5VU36 1347 aa19.6■□□□□ 0.73
SHMT2-217ENST00000555116 SPATA31A7Q8IWB4 1347 aa19.6■□□□□ 0.73
SHMT2-217ENST00000555116 EVA1CP58658 441 aa19.58■□□□□ 0.72
SHMT2-217ENST00000555116 BRWD3Q6RI45 1802 aa19.57■□□□□ 0.72
SHMT2-217ENST00000555116 FBLN1P23142 703 aa19.57■□□□□ 0.72
SHMT2-217ENST00000555116 SPATA31A1Q5TZJ5 1347 aa19.56■□□□□ 0.72
SHMT2-217ENST00000555116 SOCS7O14512 581 aa19.56■□□□□ 0.72
SHMT2-217ENST00000555116 LARP1Q6PKG0 1096 aaKnown RBP19.56■□□□□ 0.72
SHMT2-217ENST00000555116 ONECUT3O60422 494 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-217ENST00000555116 MAP2P11137 1827 aaKnown RBP19.55■□□□□ 0.72
SHMT2-217ENST00000555116 MAP3K19Q56UN5 1328 aa19.55■□□□□ 0.72
SHMT2-217ENST00000555116 THSD7AQ9UPZ6 1657 aa19.53■□□□□ 0.72
SHMT2-217ENST00000555116 WDR17Q8IZU2 1322 aa19.53■□□□□ 0.72
SHMT2-217ENST00000555116 CRB1P82279 1406 aa19.52■□□□□ 0.72
SHMT2-217ENST00000555116 FAM98CQ17RN3 349 aaKnown RBP19.52■□□□□ 0.72
SHMT2-217ENST00000555116 PEAK1Q9H792 1746 aa19.52■□□□□ 0.72
SHMT2-217ENST00000555116 PER1O15534 1290 aaPredicted RBP19.52■□□□□ 0.71
SHMT2-217ENST00000555116 RRS1Q15050 365 aaKnown RBP19.52■□□□□ 0.71
SHMT2-217ENST00000555116 IP6K1Q92551 441 aa19.52■□□□□ 0.71
SHMT2-217ENST00000555116 KNSTRNQ9Y448 316 aa19.52■□□□□ 0.71
SHMT2-217ENST00000555116 NSD2O96028 1365 aa19.52■□□□□ 0.71
SHMT2-217ENST00000555116 SEPT12Q8IYM1 358 aa19.51■□□□□ 0.71
SHMT2-217ENST00000555116 WNK3Q9BYP7 1800 aa19.51■□□□□ 0.71
SHMT2-217ENST00000555116 BLMP54132 1417 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-217ENST00000555116 AMER1Q5JTC6 1135 aaPredicted RBP19.5■□□□□ 0.71
SHMT2-217ENST00000555116 USP35Q9P2H5 1018 aa19.5■□□□□ 0.71
SHMT2-217ENST00000555116 ERBB3P21860 1342 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 RTL1A6NKG5 1358 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 HOXC9P31274 260 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 BARGINQ6ZT62 677 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 TOM1L2Q6ZVM7 507 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 TCP11L2Q8N4U5 519 aa19.49■□□□□ 0.71
SHMT2-217ENST00000555116 FAM208AQ9UK61 1670 aaKnown RBP19.48■□□□□ 0.71
SHMT2-217ENST00000555116 AMPHP49418 695 aa19.48■□□□□ 0.71
SHMT2-217ENST00000555116 RGPD2P0DJD1 1756 aa19.48■□□□□ 0.71
SHMT2-217ENST00000555116 CSB-PGBD3P0DP91 1061 aa19.48■□□□□ 0.71
SHMT2-217ENST00000555116 ANKRD24Q8TF21 1146 aa19.48■□□□□ 0.71
SHMT2-217ENST00000555116 THRAP3Q9Y2W1 955 aaKnown RBP19.48■□□□□ 0.71
SHMT2-217ENST00000555116 CARD10Q9BWT7 1032 aa19.47■□□□□ 0.71
SHMT2-217ENST00000555116 KIF24Q5T7B8 1368 aa19.46■□□□□ 0.71
SHMT2-217ENST00000555116 PARP4Q9UKK3 1724 aaKnown RBP19.46■□□□□ 0.71
SHMT2-217ENST00000555116 EMILIN1Q9Y6C2 1016 aa19.45■□□□□ 0.7
SHMT2-217ENST00000555116 A0A0G2JS52 829 aa19.44■□□□□ 0.7
SHMT2-217ENST00000555116 MYT1Q01538 1121 aa19.44■□□□□ 0.7
SHMT2-217ENST00000555116 FLT4P35916 1363 aa19.44■□□□□ 0.7
SHMT2-217ENST00000555116 MORC1Q86VD1 984 aa19.43■□□□□ 0.7
SHMT2-217ENST00000555116 POLKQ9UBT6 870 aa19.43■□□□□ 0.7
SHMT2-217ENST00000555116 TNNT2P45379 298 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-217ENST00000555116 LTV1Q96GA3 475 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-217ENST00000555116 INSRP06213 1382 aa19.43■□□□□ 0.7
SHMT2-217ENST00000555116 NPC1L1Q9UHC9 1359 aa19.43■□□□□ 0.7
SHMT2-217ENST00000555116 HSP90AB2PQ58FF8 381 aa19.42■□□□□ 0.7
SHMT2-217ENST00000555116 KRT27Q7Z3Y8 459 aa19.42■□□□□ 0.7
SHMT2-217ENST00000555116 NLRP2Q9NX02 1062 aa19.42■□□□□ 0.7
SHMT2-217ENST00000555116 DISP2A7MBM2 1401 aa19.41■□□□□ 0.7
SHMT2-217ENST00000555116 LRRC37A3O60309 1634 aa19.41■□□□□ 0.7
SHMT2-217ENST00000555116 SMG6Q86US8 1419 aaKnown RBP19.4■□□□□ 0.7
SHMT2-217ENST00000555116 CC2D1BQ5T0F9 858 aaKnown RBP19.39■□□□□ 0.7
SHMT2-217ENST00000555116 UPF1Q92900 1129 aaKnown RBP eCLIP19.39■□□□□ 0.74e-7■■■■□ 25.7
SHMT2-217ENST00000555116 PPM1GO15355 546 aaPredicted RBP19.38■□□□□ 0.69
SHMT2-217ENST00000555116 CDCA7Q9BWT1 371 aaPredicted RBP19.37■□□□□ 0.69
SHMT2-217ENST00000555116 NBPF6Q5VWK0 638 aa19.35■□□□□ 0.69
SHMT2-217ENST00000555116 NBPF4Q96M43 638 aa19.35■□□□□ 0.69
SHMT2-217ENST00000555116 FAM182BQ5T319 152 aa19.35■□□□□ 0.69
SHMT2-217ENST00000555116 EP400Q96L91 3159 aa19.34■□□□□ 0.69
SHMT2-217ENST00000555116 PDE3BQ13370 1112 aa19.34■□□□□ 0.69
SHMT2-217ENST00000555116 IL2RBP14784 551 aa19.33■□□□□ 0.69
SHMT2-217ENST00000555116 DDB1Q16531 1140 aa19.33■□□□□ 0.69
SHMT2-217ENST00000555116 CNGB1Q14028 1251 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-217ENST00000555116 NCAPD2Q15021 1401 aa19.32■□□□□ 0.68
SHMT2-217ENST00000555116 TNS2Q63HR2 1409 aa19.32■□□□□ 0.68
SHMT2-217ENST00000555116 EIF4A2Q14240 407 aaKnown RBP19.31■□□□□ 0.68
SHMT2-217ENST00000555116 USHBP1Q8N6Y0 703 aa19.31■□□□□ 0.68
SHMT2-217ENST00000555116 SBF2Q86WG5 1849 aa19.31■□□□□ 0.68
SHMT2-217ENST00000555116 EXOC5O00471 708 aa19.3■□□□□ 0.68
SHMT2-217ENST00000555116 DDX10Q13206 875 aaKnown RBP19.3■□□□□ 0.68
SHMT2-217ENST00000555116 MEGF6O75095 1541 aa19.3■□□□□ 0.68
SHMT2-217ENST00000555116 SHANK3Q9BYB0 1731 aa19.3■□□□□ 0.68
SHMT2-217ENST00000555116 MTHFSP49914 203 aa19.29■□□□□ 0.68
SHMT2-217ENST00000555116 EYA1Q99502 592 aa19.29■□□□□ 0.68
SHMT2-217ENST00000555116 RGPD1P0DJD0 1748 aa19.29■□□□□ 0.68
SHMT2-217ENST00000555116 FAM196AQ6ZSG2 479 aa19.28■□□□□ 0.68
SHMT2-217ENST00000555116 MARCH10Q8NA82 808 aaPredicted RBP19.28■□□□□ 0.68
SHMT2-217ENST00000555116 CCDC125Q86Z20 511 aa19.27■□□□□ 0.68
SHMT2-217ENST00000555116 TNS1Q9HBL0 1735 aaKnown RBP19.27■□□□□ 0.68
SHMT2-217ENST00000555116 OVOS2A0A0G2JMS6 1433 aa19.27■□□□□ 0.68
SHMT2-217ENST00000555116 KAT6BQ8WYB5 2073 aa19.25■□□□□ 0.67
SHMT2-217ENST00000555116 BCL9O00512 1426 aa19.24■□□□□ 0.67
SHMT2-217ENST00000555116 IGSF1Q8N6C5 1336 aa19.24■□□□□ 0.67
SHMT2-217ENST00000555116 PKD1L3Q7Z443 1732 aa19.24■□□□□ 0.67
SHMT2-217ENST00000555116 IL13P35225 146 aa19.24■□□□□ 0.67
SHMT2-217ENST00000555116 RAPGEF4Q8WZA2 1011 aa19.24■□□□□ 0.67
SHMT2-217ENST00000555116 COL3A1P02461 1466 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-217ENST00000555116 PARD3Q8TEW0 1356 aa19.23■□□□□ 0.67
SHMT2-217ENST00000555116 TATP17735 454 aaPredicted RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms