RNA–Protein interactions for RNA: ENST00000554491.5

ATXN3-227, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,064 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-227ENST00000554491 DNMT3LQ9UJW3 386 aa8.16□□□□□ -1.1
ATXN3-227ENST00000554491 SOS2Q07890 1332 aaPredicted RBP8.15□□□□□ -1.1
ATXN3-227ENST00000554491 UPP2O95045 317 aa8.15□□□□□ -1.1
ATXN3-227ENST00000554491 SH3D19Q5HYK7 790 aa8.15□□□□□ -1.1
ATXN3-227ENST00000554491 ZSCAN1Q8NBB4 408 aa8.15□□□□□ -1.1
ATXN3-227ENST00000554491 GPKOWQ92917 476 aaPredicted RBP eCLIP8.15□□□□□ -1.1
ATXN3-227ENST00000554491 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.15□□□□□ -1.1
ATXN3-227ENST00000554491 FKBPLQ9UIM3 349 aa8.15□□□□□ -1.1
ATXN3-227ENST00000554491 CBLBQ13191 982 aa8.14□□□□□ -1.11
ATXN3-227ENST00000554491 PPP1R26Q5T8A7 1209 aaPredicted RBP8.14□□□□□ -1.11
ATXN3-227ENST00000554491 PDXDC2PQ6P474 469 aa8.14□□□□□ -1.11
ATXN3-227ENST00000554491 OCSTAMPQ9BR26 566 aa8.14□□□□□ -1.11
ATXN3-227ENST00000554491 ARHGAP9Q9BRR9 750 aa8.14□□□□□ -1.11
ATXN3-227ENST00000554491 EMILIN1Q9Y6C2 1016 aa8.14□□□□□ -1.11
ATXN3-227ENST00000554491 VSIG8P0DPA2 414 aa8.13□□□□□ -1.11
ATXN3-227ENST00000554491 EPS8L1Q8TE68 723 aa8.13□□□□□ -1.11
ATXN3-227ENST00000554491 ATP1B4Q9UN42 357 aaPredicted RBP8.13□□□□□ -1.11
ATXN3-227ENST00000554491 PPFIA3O75145 1194 aa8.12□□□□□ -1.11
ATXN3-227ENST00000554491 AP1G2O75843 785 aa8.12□□□□□ -1.11
ATXN3-227ENST00000554491 PPP2R2DQ66LE6 453 aa8.12□□□□□ -1.11
ATXN3-227ENST00000554491 KCTD15Q96SI1 283 aaPredicted RBP8.12□□□□□ -1.11
ATXN3-227ENST00000554491 TSEN34Q9BSV6 310 aaKnown RBP8.12□□□□□ -1.11
ATXN3-227ENST00000554491 BICRAQ9NZM4 1560 aa8.12□□□□□ -1.11
ATXN3-227ENST00000554491 SLC10A4Q96EP9 437 aa8.11□□□□□ -1.11
ATXN3-227ENST00000554491 DDRGK1Q96HY6 314 aa8.11□□□□□ -1.11
ATXN3-227ENST00000554491 HMX1Q9NP08 348 aaPredicted RBP8.11□□□□□ -1.11
ATXN3-227ENST00000554491 ZBTB33Q86T24 672 aa8.1□□□□□ -1.11
ATXN3-227ENST00000554491 FAM181BA6NEQ2 426 aa8.09□□□□□ -1.11
ATXN3-227ENST00000554491 FIGNL2A6NMB9 653 aa8.09□□□□□ -1.11
ATXN3-227ENST00000554491 TTLL8A6PVC2 850 aa8.09□□□□□ -1.11
ATXN3-227ENST00000554491 Q6ZVU0 165 aa8.09□□□□□ -1.11
ATXN3-227ENST00000554491 PGPEP1Q9NXJ5 209 aa8.09□□□□□ -1.11
ATXN3-227ENST00000554491 CC2D2AQ9P2K1 1620 aa8.08□□□□□ -1.12
ATXN3-227ENST00000554491 INTS6LQ5JSJ4 861 aaKnown RBP8.08□□□□□ -1.12
ATXN3-227ENST00000554491 ADAM32Q8TC27 787 aa8.08□□□□□ -1.12
ATXN3-227ENST00000554491 AGBL1Q96MI9 1066 aa8.08□□□□□ -1.12
ATXN3-227ENST00000554491 CECR2Q9BXF3 1484 aa8.07□□□□□ -1.12
ATXN3-227ENST00000554491 ZC3H4Q9UPT8 1303 aaKnown RBP8.07□□□□□ -1.12
ATXN3-227ENST00000554491 USP17L8P0C7I0 530 aa8.07□□□□□ -1.12
ATXN3-227ENST00000554491 PTK2Q05397 1052 aa8.07□□□□□ -1.12
ATXN3-227ENST00000554491 SPINT1O43278 529 aa8.06□□□□□ -1.12
ATXN3-227ENST00000554491 PTSQ03393 145 aa8.06□□□□□ -1.12
ATXN3-227ENST00000554491 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.06□□□□□ -1.12
ATXN3-227ENST00000554491 CDV3Q9UKY7 258 aaKnown RBP8.06□□□□□ -1.12
ATXN3-227ENST00000554491 RAB15P59190 212 aa8.05□□□□□ -1.12
ATXN3-227ENST00000554491 GPR161Q8N6U8 529 aaKnown RBP8.05□□□□□ -1.12
ATXN3-227ENST00000554491 TMPRSS4Q9NRS4 437 aa8.05□□□□□ -1.12
ATXN3-227ENST00000554491 GPSM3Q9Y4H4 160 aa8.05□□□□□ -1.12
ATXN3-227ENST00000554491 RFC5P40937 340 aa8.04□□□□□ -1.12
ATXN3-227ENST00000554491 CTSOP43234 321 aaPredicted RBP8.04□□□□□ -1.12
ATXN3-227ENST00000554491 RELBQ01201 579 aa8.04□□□□□ -1.12
ATXN3-227ENST00000554491 KRT76Q01546 638 aa8.04□□□□□ -1.12
ATXN3-227ENST00000554491 DHX9Q08211 1270 aaKnown RBP8.04□□□□□ -1.12
ATXN3-227ENST00000554491 INSM2Q96T92 566 aaPredicted RBP8.04□□□□□ -1.12
ATXN3-227ENST00000554491 BCANQ96GW7 911 aa8.03□□□□□ -1.12
ATXN3-227ENST00000554491 ZNF784Q8NCA9 323 aaPredicted RBP8.02□□□□□ -1.13
ATXN3-227ENST00000554491 ZNF395Q9H8N7 513 aaPredicted RBP8.02□□□□□ -1.13
ATXN3-227ENST00000554491 NBPF20Q3BBV1 942 aa8.01□□□□□ -1.13
ATXN3-227ENST00000554491 CCDC155Q8N6L0 562 aa8.01□□□□□ -1.13
ATXN3-227ENST00000554491 TRIM34Q9BYJ4 488 aa8.01□□□□□ -1.13
ATXN3-227ENST00000554491 ERVH48-1M5A8F1 160 aa8□□□□□ -1.13
ATXN3-227ENST00000554491 LILRA1O75019 489 aa8□□□□□ -1.13
ATXN3-227ENST00000554491 ADD1P35611 737 aaKnown RBP8□□□□□ -1.13
ATXN3-227ENST00000554491 KDF1Q8NAX2 398 aaPredicted RBP8□□□□□ -1.13
ATXN3-227ENST00000554491 CNTNAP3BQ96NU0 1288 aa8□□□□□ -1.13
ATXN3-227ENST00000554491 CNTNAP3Q9BZ76 1288 aa8□□□□□ -1.13
ATXN3-227ENST00000554491 SHROOM4Q9ULL8 1493 aa8□□□□□ -1.13
ATXN3-227ENST00000554491 SLC35F4A4IF30 521 aa7.99□□□□□ -1.13
ATXN3-227ENST00000554491 DZIP3Q86Y13 1208 aaKnown RBP7.99□□□□□ -1.13
ATXN3-227ENST00000554491 POLMQ9NP87 494 aaPredicted RBP7.99□□□□□ -1.13
ATXN3-227ENST00000554491 ESPNB1AK53 854 aa7.98□□□□□ -1.13
ATXN3-227ENST00000554491 RNFT1Q5M7Z0 435 aa7.98□□□□□ -1.13
ATXN3-227ENST00000554491 PNMA1Q8ND90 353 aa7.98□□□□□ -1.13
ATXN3-227ENST00000554491 RNF217Q8TC41 542 aa7.98□□□□□ -1.13
ATXN3-227ENST00000554491 NANOS1Q8WY41 292 aaKnown RBP7.98□□□□□ -1.13
ATXN3-227ENST00000554491 COL25A1Q9BXS0 654 aaPredicted RBP7.98□□□□□ -1.13
ATXN3-227ENST00000554491 ADH1AP07327 375 aa7.97□□□□□ -1.13
ATXN3-227ENST00000554491 SENP3-EIF4A1A0A087X0R7 540 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 ITGA6P23229 1130 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 FOXD4L5Q5VV16 416 aaPredicted RBP7.96□□□□□ -1.14
ATXN3-227ENST00000554491 VWA5B2Q8N398 1253 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 IL27Q8NEV9 243 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 PCMTD1Q96MG8 357 aaPredicted RBP7.96□□□□□ -1.14
ATXN3-227ENST00000554491 GOPCQ9HD26 462 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 CYLDQ9NQC7 956 aa7.96□□□□□ -1.14
ATXN3-227ENST00000554491 EIF4G1Q04637 1599 aaKnown RBP7.96□□□□□ -1.14
ATXN3-227ENST00000554491 PTGIRP43119 386 aa7.95□□□□□ -1.14
ATXN3-227ENST00000554491 GJD4Q96KN9 370 aaPredicted RBP7.95□□□□□ -1.14
ATXN3-227ENST00000554491 CDC14CA4D256 554 aa7.94□□□□□ -1.14
ATXN3-227ENST00000554491 SLC24A1O60721 1099 aa7.94□□□□□ -1.14
ATXN3-227ENST00000554491 NEUROD2Q15784 382 aa7.94□□□□□ -1.14
ATXN3-227ENST00000554491 TMEM259Q4ZIN3 620 aa7.94□□□□□ -1.14
ATXN3-227ENST00000554491 GIGYF1O75420 1035 aaPredicted RBP7.93□□□□□ -1.14
ATXN3-227ENST00000554491 FBXO45P0C2W1 286 aa7.93□□□□□ -1.14
ATXN3-227ENST00000554491 PCDHB9Q9Y5E1 797 aa7.93□□□□□ -1.14
ATXN3-227ENST00000554491 ZBBXA8MT70 800 aa7.92□□□□□ -1.14
ATXN3-227ENST00000554491 GSK3AP49840 483 aa7.92□□□□□ -1.14
ATXN3-227ENST00000554491 WHAMMQ8TF30 809 aa7.92□□□□□ -1.14
ATXN3-227ENST00000554491 SV2AQ7L0J3 742 aa7.91□□□□□ -1.14
ATXN3-227ENST00000554491 SEPT12Q8IYM1 358 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms