RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	NUTM2E	B1AL46	878 aa	Predicted RBP	9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	CFAP99	D6REC4	459 aa		9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	ARID5B	Q14865	1188 aa		9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	NUTM2D	Q5VT03	806 aa	Predicted RBP	9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	NUTM2A	Q8IVF1	878 aa	Predicted RBP	9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	CDK15	Q96Q40	435 aa		9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	ZBTB3	Q9H5J0	574 aa		9.43	□□□□□ -0.9
PRKDC-210	ENST00000541488	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	9.42	□□□□□ -0.9	2e-6	■□□□□ 10.8
PRKDC-210	ENST00000541488	ITGB2	P05107	769 aa		9.41	□□□□□ -0.9
PRKDC-210	ENST00000541488	CLK2	P49760	499 aa	Known RBP	9.41	□□□□□ -0.9
PRKDC-210	ENST00000541488	NEUROD2	Q15784	382 aa		9.41	□□□□□ -0.9
PRKDC-210	ENST00000541488	SPDYE5	A6NIY4	337 aa		9.39	□□□□□ -0.91
PRKDC-210	ENST00000541488	GJA5	P36382	358 aa		9.39	□□□□□ -0.91
PRKDC-210	ENST00000541488	NR5A1	Q13285	461 aa		9.39	□□□□□ -0.91
PRKDC-210	ENST00000541488	PROC	P04070	461 aa		9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488	CTH	P32929	405 aa		9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488	RTL5	Q5HYW3	569 aa	Predicted RBP	9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488		Q8N3U1	123 aa		9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488	CCDC155	Q8N6L0	562 aa		9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488	RSPH6A	Q9H0K4	717 aa		9.38	□□□□□ -0.91
PRKDC-210	ENST00000541488	TTLL8	A6PVC2	850 aa		9.37	□□□□□ -0.91
PRKDC-210	ENST00000541488	KRTAP1-3	Q8IUG1	177 aa		9.37	□□□□□ -0.91
PRKDC-210	ENST00000541488	PROCA1	Q8NCQ7	364 aa	Predicted RBP	9.37	□□□□□ -0.91
PRKDC-210	ENST00000541488	FOXJ1	Q92949	421 aa		9.37	□□□□□ -0.91
PRKDC-210	ENST00000541488	DCAF5	Q96JK2	942 aa		9.37	□□□□□ -0.91
PRKDC-210	ENST00000541488	PER1	O15534	1290 aa	Predicted RBP	9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	GRM5	P41594	1212 aa		9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	PRPF38B	Q5VTL8	546 aa	Known RBP	9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	LYPD4	Q6UWN0	246 aa		9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	VWA5B2	Q8N398	1253 aa		9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	DDRGK1	Q96HY6	314 aa		9.36	□□□□□ -0.91
PRKDC-210	ENST00000541488	FIGNL2	A6NMB9	653 aa		9.35	□□□□□ -0.91
PRKDC-210	ENST00000541488	LILRB3	O75022	631 aa		9.35	□□□□□ -0.91
PRKDC-210	ENST00000541488	ADAMTS2	O95450	1211 aa		9.35	□□□□□ -0.91
PRKDC-210	ENST00000541488	MAP10	Q9P2G4	905 aa		9.35	□□□□□ -0.91
PRKDC-210	ENST00000541488	CDC14C	A4D256	554 aa		9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488		K7ELQ4	463 aa	Predicted RBP	9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488	FBXO31	Q5XUX0	539 aa	Predicted RBP	9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488	GALNT6	Q8NCL4	622 aa		9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488	IL27	Q8NEV9	243 aa		9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488	TSEN34	Q9BSV6	310 aa	Known RBP	9.34	□□□□□ -0.91
PRKDC-210	ENST00000541488	PRKCSH	P14314	528 aa	Predicted RBP	9.33	□□□□□ -0.92
PRKDC-210	ENST00000541488	ITGA6	P23229	1130 aa		9.33	□□□□□ -0.92
PRKDC-210	ENST00000541488	MAP3K10	Q02779	954 aa		9.33	□□□□□ -0.92
PRKDC-210	ENST00000541488	DESI1	Q6ICB0	168 aa		9.33	□□□□□ -0.92
PRKDC-210	ENST00000541488	LYPD8	Q6UX82	237 aa		9.33	□□□□□ -0.92
PRKDC-210	ENST00000541488	SKIV2L	Q15477	1246 aa	Known RBP	9.32	□□□□□ -0.92
PRKDC-210	ENST00000541488	SH3D19	Q5HYK7	790 aa		9.32	□□□□□ -0.92
PRKDC-210	ENST00000541488	SV2A	Q7L0J3	742 aa		9.32	□□□□□ -0.92
PRKDC-210	ENST00000541488	SLC35F4	A4IF30	521 aa		9.31	□□□□□ -0.92
PRKDC-210	ENST00000541488	BRPF1	P55201	1214 aa	Predicted RBP	9.31	□□□□□ -0.92
PRKDC-210	ENST00000541488	CELA2B	P08218	269 aa	Predicted RBP	9.3	□□□□□ -0.92
PRKDC-210	ENST00000541488	TUSC1	Q2TAM9	212 aa		9.3	□□□□□ -0.92
PRKDC-210	ENST00000541488	C4orf48	Q5BLP8	95 aa		9.3	□□□□□ -0.92
PRKDC-210	ENST00000541488	HELB	Q8NG08	1087 aa	Predicted RBP	9.3	□□□□□ -0.92
PRKDC-210	ENST00000541488	CNTNAP5	Q8WYK1	1306 aa		9.3	□□□□□ -0.92
PRKDC-210	ENST00000541488	PHF20L1	A8MW92	1017 aa		9.29	□□□□□ -0.92
PRKDC-210	ENST00000541488	CTDSPL2	Q05D32	466 aa		9.29	□□□□□ -0.92
PRKDC-210	ENST00000541488	F12	P00748	615 aa	Predicted RBP	9.28	□□□□□ -0.92
PRKDC-210	ENST00000541488	FSHR	P23945	695 aa		9.27	□□□□□ -0.93
PRKDC-210	ENST00000541488	SRSF11	Q05519	484 aa	Known RBP	9.27	□□□□□ -0.93
PRKDC-210	ENST00000541488	AGER	Q15109	404 aa		9.26	□□□□□ -0.93
PRKDC-210	ENST00000541488	SH3RF1	Q7Z6J0	888 aa		9.26	□□□□□ -0.93
PRKDC-210	ENST00000541488	LRRN4	Q8WUT4	740 aa		9.26	□□□□□ -0.93
PRKDC-210	ENST00000541488	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	9.26	□□□□□ -0.93
PRKDC-210	ENST00000541488	AP1G2	O75843	785 aa		9.25	□□□□□ -0.93
PRKDC-210	ENST00000541488	ENAM	Q9NRM1	1142 aa		9.25	□□□□□ -0.93
PRKDC-210	ENST00000541488	SPINT1	O43278	529 aa		9.23	□□□□□ -0.93
PRKDC-210	ENST00000541488	GAS6	Q14393	721 aa		9.23	□□□□□ -0.93
PRKDC-210	ENST00000541488	EMILIN1	Q9Y6C2	1016 aa		9.23	□□□□□ -0.93
PRKDC-210	ENST00000541488	BAG6	P46379	1132 aa		9.22	□□□□□ -0.93
PRKDC-210	ENST00000541488	BEND7	Q8N7W2	519 aa	Predicted RBP	9.22	□□□□□ -0.93
PRKDC-210	ENST00000541488	PCMTD1	Q96MG8	357 aa	Predicted RBP	9.22	□□□□□ -0.93
PRKDC-210	ENST00000541488	PODN	Q7Z5L7	613 aa		9.21	□□□□□ -0.94
PRKDC-210	ENST00000541488	BPHL	Q86WA6	291 aa	Predicted RBP	9.21	□□□□□ -0.94
PRKDC-210	ENST00000541488	CBLB	Q13191	982 aa		9.2	□□□□□ -0.94
PRKDC-210	ENST00000541488	NR6A1	Q15406	480 aa		9.2	□□□□□ -0.94
PRKDC-210	ENST00000541488	CCDC116	Q8IYX3	515 aa		9.2	□□□□□ -0.94
PRKDC-210	ENST00000541488	FURIN	P09958	794 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	RFC5	P40937	340 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	LCE3B	Q5TA77	95 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	PPP2R2D	Q66LE6	453 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	VASH1	Q7L8A9	365 aa	Predicted RBP	9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	C1QTNF2	Q9BXJ5	285 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	MAP4K5	Q9Y4K4	846 aa		9.19	□□□□□ -0.94
PRKDC-210	ENST00000541488	SENP3-EIF4A1	A0A087X0R7	540 aa		9.18	□□□□□ -0.94
PRKDC-210	ENST00000541488	MAGEB6P1	A0A0J9YX57	407 aa		9.18	□□□□□ -0.94
PRKDC-210	ENST00000541488	EPS8L1	Q8TE68	723 aa		9.18	□□□□□ -0.94
PRKDC-210	ENST00000541488	CARD14	Q9BXL6	1004 aa		9.18	□□□□□ -0.94
PRKDC-210	ENST00000541488	CTSO	P43234	321 aa	Predicted RBP	9.17	□□□□□ -0.94
PRKDC-210	ENST00000541488		Q6ZVU0	165 aa		9.17	□□□□□ -0.94
PRKDC-210	ENST00000541488	HMX1	Q9NP08	348 aa	Predicted RBP	9.17	□□□□□ -0.94
PRKDC-210	ENST00000541488	USP17L8	P0C7I0	530 aa		9.16	□□□□□ -0.94
PRKDC-210	ENST00000541488	NEDD1	Q8NHV4	660 aa		9.16	□□□□□ -0.94
PRKDC-210	ENST00000541488	ARMC2	Q8NEN0	867 aa		9.15	□□□□□ -0.94
PRKDC-210	ENST00000541488	CUEDC1	Q9NWM3	386 aa	Predicted RBP	9.15	□□□□□ -0.94
PRKDC-210	ENST00000541488	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	9.14	□□□□□ -0.95
PRKDC-210	ENST00000541488	NBPF14	Q5TI25	921 aa		9.14	□□□□□ -0.95
PRKDC-210	ENST00000541488	KRTAP4-12	Q9BQ66	201 aa		9.14	□□□□□ -0.95
PRKDC-210	ENST00000541488	TRMT44	Q8IYL2	757 aa	Known RBP	9.13	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms