RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 ZBTB7CA1YPR0 619 aa28.34■■■□□ 2.13
CCS-208ENST00000533244 THSD7AQ9UPZ6 1657 aa28.33■■■□□ 2.13
CCS-208ENST00000533244 EVA1CP58658 441 aa28.33■■■□□ 2.13
CCS-208ENST00000533244 LARP1Q6PKG0 1096 aaKnown RBP28.33■■■□□ 2.13
CCS-208ENST00000533244 RGPD5Q99666 1765 aa28.32■■■□□ 2.12
CCS-208ENST00000533244 BRWD3Q6RI45 1802 aa28.32■■■□□ 2.12
CCS-208ENST00000533244 SEPT12Q8IYM1 358 aa28.31■■■□□ 2.12
CCS-208ENST00000533244 KIF7Q2M1P5 1343 aa28.31■■■□□ 2.12
CCS-208ENST00000533244 FAM98CQ17RN3 349 aaKnown RBP28.3■■■□□ 2.12
CCS-208ENST00000533244 GGNBP2Q9H3C7 697 aa28.3■■■□□ 2.12
CCS-208ENST00000533244 CRB1P82279 1406 aa28.29■■■□□ 2.12
CCS-208ENST00000533244 WDR17Q8IZU2 1322 aa28.27■■■□□ 2.12
CCS-208ENST00000533244 BARGINQ6ZT62 677 aa28.26■■■□□ 2.11
CCS-208ENST00000533244 UPF1Q92900 1129 aaKnown RBP eCLIP28.25■■■□□ 2.11
CCS-208ENST00000533244 PANK3Q9H999 370 aa28.25■■■□□ 2.11
CCS-208ENST00000533244 CGNL1Q0VF96 1302 aa28.24■■■□□ 2.11
CCS-208ENST00000533244 THRAP3Q9Y2W1 955 aaKnown RBP28.24■■■□□ 2.11
CCS-208ENST00000533244 TCP11L2Q8N4U5 519 aa28.23■■■□□ 2.11
CCS-208ENST00000533244 BLMP54132 1417 aaPredicted RBP28.23■■■□□ 2.11
CCS-208ENST00000533244 MAP3K19Q56UN5 1328 aa28.22■■■□□ 2.11
CCS-208ENST00000533244 USP35Q9P2H5 1018 aa28.22■■■□□ 2.11
CCS-208ENST00000533244 EP400Q96L91 3159 aa28.22■■■□□ 2.11
CCS-208ENST00000533244 ERBB3P21860 1342 aa28.21■■■□□ 2.11
CCS-208ENST00000533244 ANKRD26Q9UPS8 1709 aa28.21■■■□□ 2.11
CCS-208ENST00000533244 FBLN1P23142 703 aa28.2■■■□□ 2.11
CCS-208ENST00000533244 IP6K1Q92551 441 aa28.2■■■□□ 2.11
CCS-208ENST00000533244 CCDC7Q96M83 1385 aa28.2■■■□□ 2.1
CCS-208ENST00000533244 TOM1L2Q6ZVM7 507 aa28.19■■■□□ 2.1
CCS-208ENST00000533244 KRT27Q7Z3Y8 459 aa28.19■■■□□ 2.1
CCS-208ENST00000533244 RTL1A6NKG5 1358 aa28.19■■■□□ 2.1
CCS-208ENST00000533244 WNK3Q9BYP7 1800 aa28.19■■■□□ 2.1
CCS-208ENST00000533244 A0A0G2JS52 829 aa28.18■■■□□ 2.1
CCS-208ENST00000533244 MYT1Q01538 1121 aa28.18■■■□□ 2.1
CCS-208ENST00000533244 WASHC2AQ641Q2 1341 aa28.18■■■□□ 2.1
CCS-208ENST00000533244 PARP4Q9UKK3 1724 aaKnown RBP28.18■■■□□ 2.1
CCS-208ENST00000533244 CARD10Q9BWT7 1032 aa28.18■■■□□ 2.1
CCS-208ENST00000533244 HOXC9P31274 260 aa28.16■■■□□ 2.1
CCS-208ENST00000533244 NSD2O96028 1365 aa28.15■■■□□ 2.1
CCS-208ENST00000533244 CSB-PGBD3P0DP91 1061 aa28.15■■■□□ 2.1
CCS-208ENST00000533244 RRS1Q15050 365 aaKnown RBP28.15■■■□□ 2.1
CCS-208ENST00000533244 ANKRD24Q8TF21 1146 aa28.15■■■□□ 2.1
CCS-208ENST00000533244 KIF24Q5T7B8 1368 aa28.14■■■□□ 2.1
CCS-208ENST00000533244 FAM208AQ9UK61 1670 aaKnown RBP28.14■■■□□ 2.1
CCS-208ENST00000533244 PEAK1Q9H792 1746 aa28.14■■■□□ 2.1
CCS-208ENST00000533244 DISP2A7MBM2 1401 aa28.13■■■□□ 2.09
CCS-208ENST00000533244 AMPHP49418 695 aa28.12■■■□□ 2.09
CCS-208ENST00000533244 LRRC37A3O60309 1634 aa28.12■■■□□ 2.09
CCS-208ENST00000533244 FLT4P35916 1363 aa28.08■■■□□ 2.09
CCS-208ENST00000533244 PER1O15534 1290 aaPredicted RBP28.08■■■□□ 2.09
CCS-208ENST00000533244 CDCA7Q9BWT1 371 aaPredicted RBP28.08■■■□□ 2.09
CCS-208ENST00000533244 KNSTRNQ9Y448 316 aa28.08■■■□□ 2.09
CCS-208ENST00000533244 AMER1Q5JTC6 1135 aaPredicted RBP28.07■■■□□ 2.08
CCS-208ENST00000533244 NLRP2Q9NX02 1062 aa28.07■■■□□ 2.08
CCS-208ENST00000533244 INSRP06213 1382 aa28.07■■■□□ 2.08
CCS-208ENST00000533244 MAP2P11137 1827 aaKnown RBP28.06■■■□□ 2.08
CCS-208ENST00000533244 CCDC125Q86Z20 511 aa28.06■■■□□ 2.08
CCS-208ENST00000533244 EMILIN1Q9Y6C2 1016 aa28.06■■■□□ 2.08
CCS-208ENST00000533244 FAM182BQ5T319 152 aa28.03■■■□□ 2.08
CCS-208ENST00000533244 LTV1Q96GA3 475 aaPredicted RBP28.03■■■□□ 2.08
CCS-208ENST00000533244 PDE3BQ13370 1112 aa28.02■■■□□ 2.08
CCS-208ENST00000533244 HSP90AB2PQ58FF8 381 aa28.02■■■□□ 2.08
CCS-208ENST00000533244 POLKQ9UBT6 870 aa28.02■■■□□ 2.08
CCS-208ENST00000533244 RGPD2P0DJD1 1756 aa28.02■■■□□ 2.08
CCS-208ENST00000533244 SMG6Q86US8 1419 aaKnown RBP28.01■■■□□ 2.07
CCS-208ENST00000533244 DDB1Q16531 1140 aa28.01■■■□□ 2.07
CCS-208ENST00000533244 TNS2Q63HR2 1409 aa28■■■□□ 2.07
CCS-208ENST00000533244 NPC1L1Q9UHC9 1359 aa27.98■■■□□ 2.07
CCS-208ENST00000533244 FAM196AQ6ZSG2 479 aa27.98■■■□□ 2.07
CCS-208ENST00000533244 MORC1Q86VD1 984 aa27.98■■■□□ 2.07
CCS-208ENST00000533244 RGPD1P0DJD0 1748 aa27.97■■■□□ 2.07
CCS-208ENST00000533244 IL2RBP14784 551 aa27.97■■■□□ 2.07
CCS-208ENST00000533244 TNNT2P45379 298 aaPredicted RBP27.97■■■□□ 2.07
CCS-208ENST00000533244 OVOS2A0A0G2JMS6 1433 aa27.96■■■□□ 2.07
CCS-208ENST00000533244 TNS1Q9HBL0 1735 aaKnown RBP27.95■■■□□ 2.07
CCS-208ENST00000533244 NBPF6Q5VWK0 638 aa27.95■■■□□ 2.07
CCS-208ENST00000533244 NBPF4Q96M43 638 aa27.95■■■□□ 2.07
CCS-208ENST00000533244 BCL9O00512 1426 aa27.94■■■□□ 2.06
CCS-208ENST00000533244 PPM1GO15355 546 aaPredicted RBP27.93■■■□□ 2.06
CCS-208ENST00000533244 ZEB1P37275 1124 aaPredicted RBP27.93■■■□□ 2.06
CCS-208ENST00000533244 NCAPD2Q15021 1401 aa27.93■■■□□ 2.06
CCS-208ENST00000533244 EXOC5O00471 708 aa27.92■■■□□ 2.06
CCS-208ENST00000533244 MARCH10Q8NA82 808 aaPredicted RBP27.92■■■□□ 2.06
CCS-208ENST00000533244 MEGF6O75095 1541 aa27.9■■■□□ 2.06
CCS-208ENST00000533244 SF3B2Q13435 895 aaKnown RBP27.89■■■□□ 2.06
CCS-208ENST00000533244 SBF2Q86WG5 1849 aa27.89■■■□□ 2.05
CCS-208ENST00000533244 CC2D1BQ5T0F9 858 aaKnown RBP27.87■■■□□ 2.05
CCS-208ENST00000533244 USHBP1Q8N6Y0 703 aa27.87■■■□□ 2.05
CCS-208ENST00000533244 TRIM37O94972 964 aa27.86■■■□□ 2.05
CCS-208ENST00000533244 DEFB132Q7Z7B7 95 aa27.86■■■□□ 2.05
CCS-208ENST00000533244 SHANK3Q9BYB0 1731 aa27.86■■■□□ 2.05
CCS-208ENST00000533244 EIF4A2Q14240 407 aaKnown RBP27.85■■■□□ 2.05
CCS-208ENST00000533244 BAG6P46379 1132 aa27.83■■■□□ 2.05
CCS-208ENST00000533244 EYA1Q99502 592 aa27.83■■■□□ 2.05
CCS-208ENST00000533244 RAPGEF4Q8WZA2 1011 aa27.81■■■□□ 2.04
CCS-208ENST00000533244 IGSF1Q8N6C5 1336 aa27.79■■■□□ 2.04
CCS-208ENST00000533244 PKD1L3Q7Z443 1732 aa27.78■■■□□ 2.04
CCS-208ENST00000533244 TATP17735 454 aaPredicted RBP27.78■■■□□ 2.04
CCS-208ENST00000533244 ZCRB1Q8TBF4 217 aaKnown RBP27.78■■■□□ 2.04
CCS-208ENST00000533244 NHSQ6T4R5 1651 aa27.77■■■□□ 2.04
CCS-208ENST00000533244 MTHFSP49914 203 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms