RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 RRS1Q15050 365 aaKnown RBP13.42□□□□□ -0.26
TOPBP1-209ENST00000513818 SLIT2O94813 1529 aa13.42□□□□□ -0.26
TOPBP1-209ENST00000513818 CPDO75976 1380 aa13.42□□□□□ -0.26
TOPBP1-209ENST00000513818 NWD2Q9ULI1 1742 aa13.42□□□□□ -0.26
TOPBP1-209ENST00000513818 CAMTA1Q9Y6Y1 1673 aa13.41□□□□□ -0.26
TOPBP1-209ENST00000513818 C1QBPQ07021 282 aaKnown RBP13.41□□□□□ -0.26
TOPBP1-209ENST00000513818 KCNH5Q8NCM2 988 aa13.41□□□□□ -0.26
TOPBP1-209ENST00000513818 NSD2O96028 1365 aa13.41□□□□□ -0.26
TOPBP1-209ENST00000513818 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.41□□□□□ -0.26
TOPBP1-209ENST00000513818 BTG4Q9NY30 223 aa13.4□□□□□ -0.26
TOPBP1-209ENST00000513818 RGS17Q9UGC6 210 aaPredicted RBP13.4□□□□□ -0.26
TOPBP1-209ENST00000513818 BCL9LQ86UU0 1499 aa13.4□□□□□ -0.26
TOPBP1-209ENST00000513818 MAP3K19Q56UN5 1328 aa13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 MORC1Q86VD1 984 aa13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 ARHGEF25Q86VW2 580 aa13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 USP21Q9UK80 565 aa13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 EMILIN1Q9Y6C2 1016 aa13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 MAP2P11137 1827 aaKnown RBP13.39□□□□□ -0.27
TOPBP1-209ENST00000513818 COL5A2P05997 1499 aaPredicted RBP13.38□□□□□ -0.27
TOPBP1-209ENST00000513818 SLC4A2P04920 1241 aa13.38□□□□□ -0.27
TOPBP1-209ENST00000513818 STRN4Q9NRL3 753 aa13.38□□□□□ -0.27
TOPBP1-209ENST00000513818 AXIN2Q9Y2T1 843 aa13.38□□□□□ -0.27
TOPBP1-209ENST00000513818 AATKQ6ZMQ8 1374 aa13.37□□□□□ -0.27
TOPBP1-209ENST00000513818 FNBP4Q8N3X1 1017 aaPredicted RBP13.37□□□□□ -0.27
TOPBP1-209ENST00000513818 ABCC6O95255 1503 aa13.36□□□□□ -0.27
TOPBP1-209ENST00000513818 PPM1GO15355 546 aaPredicted RBP13.36□□□□□ -0.27
TOPBP1-209ENST00000513818 POTEAQ6S8J7 498 aa13.36□□□□□ -0.27
TOPBP1-209ENST00000513818 ATRNO75882 1429 aa13.36□□□□□ -0.27
TOPBP1-209ENST00000513818 GLI3P10071 1580 aa13.36□□□□□ -0.27
TOPBP1-209ENST00000513818 RGPD2P0DJD1 1756 aa13.35□□□□□ -0.27
TOPBP1-209ENST00000513818 NPC1L1Q9UHC9 1359 aa13.35□□□□□ -0.27
TOPBP1-209ENST00000513818 AMPHP49418 695 aa13.35□□□□□ -0.27
TOPBP1-209ENST00000513818 UNC5CLQ8IV45 518 aa13.35□□□□□ -0.27
TOPBP1-209ENST00000513818 LTV1Q96GA3 475 aaPredicted RBP13.35□□□□□ -0.27
TOPBP1-209ENST00000513818 HOXC9P31274 260 aa13.34□□□□□ -0.27
TOPBP1-209ENST00000513818 LARP1Q6PKG0 1096 aaKnown RBP13.34□□□□□ -0.27
TOPBP1-209ENST00000513818 CCDC9Q9Y3X0 531 aaKnown RBP13.34□□□□□ -0.27
TOPBP1-209ENST00000513818 RTL1A6NKG5 1358 aa13.33□□□□□ -0.27
TOPBP1-209ENST00000513818 SMG6Q86US8 1419 aaKnown RBP13.33□□□□□ -0.28
TOPBP1-209ENST00000513818 ZNF772Q68DY9 489 aaPredicted RBP13.33□□□□□ -0.28
TOPBP1-209ENST00000513818 FOXD4L1Q9NU39 408 aa13.33□□□□□ -0.28
TOPBP1-209ENST00000513818 POLKQ9UBT6 870 aa13.33□□□□□ -0.28
TOPBP1-209ENST00000513818 U3KPZ7 1027 aaPredicted RBP13.33□□□□□ -0.28
TOPBP1-209ENST00000513818 FLT4P35916 1363 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 BLMP54132 1417 aaPredicted RBP13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 EVA1CP58658 441 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 HSP90AB2PQ58FF8 381 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 IP6K1Q92551 441 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 USP35Q9P2H5 1018 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 WNK3Q9BYP7 1800 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
TOPBP1-209ENST00000513818 CDK12Q9NYV4 1490 aaPredicted RBP13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 CSB-PGBD3P0DP91 1061 aa13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 ANKRD24Q8TF21 1146 aa13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 QTRT2Q9H974 415 aaKnown RBP13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 TRPC5Q9UL62 973 aaPredicted RBP13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 ERBB3P21860 1342 aa13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 FAM208AQ9UK61 1670 aaKnown RBP13.31□□□□□ -0.28
TOPBP1-209ENST00000513818 VPS72Q15906 364 aa13.3□□□□□ -0.28
TOPBP1-209ENST00000513818 WDR17Q8IZU2 1322 aa13.3□□□□□ -0.28
TOPBP1-209ENST00000513818 RGS12O14924 1447 aa13.3□□□□□ -0.28
TOPBP1-209ENST00000513818 CRB1P82279 1406 aa13.3□□□□□ -0.28
TOPBP1-209ENST00000513818 TOM1L2Q6ZVM7 507 aa13.29□□□□□ -0.28
TOPBP1-209ENST00000513818 SPATA31A5Q5VU36 1347 aa13.29□□□□□ -0.28
TOPBP1-209ENST00000513818 SPATA31A7Q8IWB4 1347 aa13.29□□□□□ -0.28
TOPBP1-209ENST00000513818 INSRP06213 1382 aa13.29□□□□□ -0.28
TOPBP1-209ENST00000513818 COL3A1P02461 1466 aaPredicted RBP13.29□□□□□ -0.28
TOPBP1-209ENST00000513818 PPP2R1AP30153 589 aa13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 MTHFSP49914 203 aa13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 GJD4Q96KN9 370 aaPredicted RBP13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 SPATA31A1Q5TZJ5 1347 aa13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 KIF24Q5T7B8 1368 aa13.28□□□□□ -0.28
TOPBP1-209ENST00000513818 FAM98CQ17RN3 349 aaKnown RBP13.27□□□□□ -0.29
TOPBP1-209ENST00000513818 NLRP2Q9NX02 1062 aa13.27□□□□□ -0.29
TOPBP1-209ENST00000513818 THSD7AQ9UPZ6 1657 aa13.27□□□□□ -0.29
TOPBP1-209ENST00000513818 A0A0G2JS52 829 aa13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 LRRC37A3O60309 1634 aa13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 RXRBP28702 533 aa13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 RBM6P78332 1123 aaKnown RBP13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 MYT1Q01538 1121 aa13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 EIF4A2Q14240 407 aaKnown RBP13.26□□□□□ -0.29
TOPBP1-209ENST00000513818 BRWD3Q6RI45 1802 aa13.25□□□□□ -0.29
TOPBP1-209ENST00000513818 RGPD1P0DJD0 1748 aa13.25□□□□□ -0.29
TOPBP1-209ENST00000513818 NBPF6Q5VWK0 638 aa13.24□□□□□ -0.29
TOPBP1-209ENST00000513818 ILDR2Q71H61 639 aa13.24□□□□□ -0.29
TOPBP1-209ENST00000513818 NBPF4Q96M43 638 aa13.24□□□□□ -0.29
TOPBP1-209ENST00000513818 PRKRIP1Q9H875 184 aaPredicted RBP13.24□□□□□ -0.29
TOPBP1-209ENST00000513818 MEGF6O75095 1541 aa13.23□□□□□ -0.29
TOPBP1-209ENST00000513818 PARP4Q9UKK3 1724 aaKnown RBP13.23□□□□□ -0.29
TOPBP1-209ENST00000513818 TCP11L2Q8N4U5 519 aa13.23□□□□□ -0.29
TOPBP1-209ENST00000513818 CARD10Q9BWT7 1032 aa13.23□□□□□ -0.29
TOPBP1-209ENST00000513818 DISP2A7MBM2 1401 aa13.22□□□□□ -0.29
TOPBP1-209ENST00000513818 MYBBP1AQ9BQG0 1328 aaKnown RBP13.22□□□□□ -0.29
TOPBP1-209ENST00000513818 RALBP1Q15311 655 aa13.22□□□□□ -0.29
TOPBP1-209ENST00000513818 IL13P35225 146 aa13.21□□□□□ -0.29
TOPBP1-209ENST00000513818 AEBP1Q8IUX7 1158 aa13.21□□□□□ -0.29
TOPBP1-209ENST00000513818 SEPT12Q8IYM1 358 aa13.21□□□□□ -0.29
TOPBP1-209ENST00000513818 EYA1Q99502 592 aa13.21□□□□□ -0.29
TOPBP1-209ENST00000513818 SHANK3Q9BYB0 1731 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms