RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NWD2Q9ULI1 1742 aa20.24■□□□□ 0.83
NUP54-213ENST00000513352 RTL1A6NKG5 1358 aa20.23■□□□□ 0.83
NUP54-213ENST00000513352 HOXC9P31274 260 aa20.23■□□□□ 0.83
NUP54-213ENST00000513352 EVA1CP58658 441 aa20.23■□□□□ 0.83
NUP54-213ENST00000513352 RALBP1Q15311 655 aa20.23■□□□□ 0.83
NUP54-213ENST00000513352 ABCC6O95255 1503 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 FLT4P35916 1363 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 IP6K1Q92551 441 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 LTV1Q96GA3 475 aaPredicted RBP20.22■□□□□ 0.83
NUP54-213ENST00000513352 USP21Q9UK80 565 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 CAMTA1Q9Y6Y1 1673 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 SLIT2O94813 1529 aa20.22■□□□□ 0.83
NUP54-213ENST00000513352 CSB-PGBD3P0DP91 1061 aa20.21■□□□□ 0.83
NUP54-213ENST00000513352 PPP2R1AP30153 589 aa20.21■□□□□ 0.83
NUP54-213ENST00000513352 MTHFSP49914 203 aa20.21■□□□□ 0.83
NUP54-213ENST00000513352 AXIN2Q9Y2T1 843 aa20.21■□□□□ 0.83
NUP54-213ENST00000513352 NRAPQ86VF7 1730 aa20.21■□□□□ 0.83
NUP54-213ENST00000513352 PRKRIP1Q9H875 184 aaPredicted RBP20.2■□□□□ 0.82
NUP54-213ENST00000513352 CCDC9Q9Y3X0 531 aaKnown RBP20.2■□□□□ 0.82
NUP54-213ENST00000513352 KIF24Q5T7B8 1368 aa20.2■□□□□ 0.82
NUP54-213ENST00000513352 BLMP54132 1417 aaPredicted RBP20.19■□□□□ 0.82
NUP54-213ENST00000513352 SMG6Q86US8 1419 aaKnown RBP20.19■□□□□ 0.82
NUP54-213ENST00000513352 DIEXFQ68CQ4 756 aaKnown RBP20.19■□□□□ 0.82
NUP54-213ENST00000513352 UNC5CLQ8IV45 518 aa20.19■□□□□ 0.82
NUP54-213ENST00000513352 FNBP4Q8N3X1 1017 aaPredicted RBP20.19■□□□□ 0.82
NUP54-213ENST00000513352 COL5A2P05997 1499 aaPredicted RBP20.18■□□□□ 0.82
NUP54-213ENST00000513352 CDK12Q9NYV4 1490 aaPredicted RBP20.18■□□□□ 0.82
NUP54-213ENST00000513352 HSP90AB2PQ58FF8 381 aa20.18■□□□□ 0.82
NUP54-213ENST00000513352 ANKRD24Q8TF21 1146 aa20.18■□□□□ 0.82
NUP54-213ENST00000513352 MYBBP1AQ9BQG0 1328 aaKnown RBP20.18■□□□□ 0.82
NUP54-213ENST00000513352 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.18■□□□□ 0.82
NUP54-213ENST00000513352 ZNF772Q68DY9 489 aaPredicted RBP20.17■□□□□ 0.82
NUP54-213ENST00000513352 BCL9LQ86UU0 1499 aa20.17■□□□□ 0.82
NUP54-213ENST00000513352 CFAP53Q96M91 514 aa20.16■□□□□ 0.82
NUP54-213ENST00000513352 INSRP06213 1382 aa20.16■□□□□ 0.82
NUP54-213ENST00000513352 LARP1Q6PKG0 1096 aaKnown RBP20.15■□□□□ 0.82
NUP54-213ENST00000513352 TOM1L2Q6ZVM7 507 aa20.15■□□□□ 0.82
NUP54-213ENST00000513352 ERBB3P21860 1342 aa20.15■□□□□ 0.82
NUP54-213ENST00000513352 WDR17Q8IZU2 1322 aa20.14■□□□□ 0.81
NUP54-213ENST00000513352 NLRP2Q9NX02 1062 aa20.14■□□□□ 0.81
NUP54-213ENST00000513352 FAM208AQ9UK61 1670 aaKnown RBP20.13■□□□□ 0.81
NUP54-213ENST00000513352 USP35Q9P2H5 1018 aa20.13■□□□□ 0.81
NUP54-213ENST00000513352 TRPC5Q9UL62 973 aaPredicted RBP20.13■□□□□ 0.81
NUP54-213ENST00000513352 RGPD2P0DJD1 1756 aa20.13■□□□□ 0.81
NUP54-213ENST00000513352 QTRT2Q9H974 415 aaKnown RBP20.12■□□□□ 0.81
NUP54-213ENST00000513352 ATRNO75882 1429 aa20.11■□□□□ 0.81
NUP54-213ENST00000513352 EIF4A2Q14240 407 aaKnown RBP20.11■□□□□ 0.81
NUP54-213ENST00000513352 VPS72Q15906 364 aa20.11■□□□□ 0.81
NUP54-213ENST00000513352 CRB1P82279 1406 aa20.1■□□□□ 0.81
NUP54-213ENST00000513352 DIAPH1O60610 1272 aaKnown RBP20.09■□□□□ 0.81
NUP54-213ENST00000513352 RGS17Q9UGC6 210 aaPredicted RBP20.09■□□□□ 0.81
NUP54-213ENST00000513352 SPATA31A5Q5VU36 1347 aa20.08■□□□□ 0.81
NUP54-213ENST00000513352 SPATA31A7Q8IWB4 1347 aa20.08■□□□□ 0.81
NUP54-213ENST00000513352 USHBP1Q8N6Y0 703 aa20.08■□□□□ 0.81
NUP54-213ENST00000513352 COL3A1P02461 1466 aaPredicted RBP20.07■□□□□ 0.8
NUP54-213ENST00000513352 A0A0G2JS52 829 aa20.07■□□□□ 0.8
NUP54-213ENST00000513352 U2SURPO15042 1029 aaKnown RBP20.07■□□□□ 0.8
NUP54-213ENST00000513352 MYT1Q01538 1121 aa20.07■□□□□ 0.8
NUP54-213ENST00000513352 GJD4Q96KN9 370 aaPredicted RBP20.07■□□□□ 0.8
NUP54-213ENST00000513352 SPATA31A1Q5TZJ5 1347 aa20.06■□□□□ 0.8
NUP54-213ENST00000513352 NBPF6Q5VWK0 638 aa20.06■□□□□ 0.8
NUP54-213ENST00000513352 POTEAQ6S8J7 498 aa20.06■□□□□ 0.8
NUP54-213ENST00000513352 NBPF4Q96M43 638 aa20.06■□□□□ 0.8
NUP54-213ENST00000513352 CARD10Q9BWT7 1032 aa20.06■□□□□ 0.8
NUP54-213ENST00000513352 IL13P35225 146 aa20.05■□□□□ 0.8
NUP54-213ENST00000513352 TCP11L2Q8N4U5 519 aa20.05■□□□□ 0.8
NUP54-213ENST00000513352 EYA1Q99502 592 aa20.05■□□□□ 0.8
NUP54-213ENST00000513352 NUDCQ9Y266 331 aa20.05■□□□□ 0.8
NUP54-213ENST00000513352 GLI3P10071 1580 aa20.04■□□□□ 0.8
NUP54-213ENST00000513352 RXRBP28702 533 aa20.04■□□□□ 0.8
NUP54-213ENST00000513352 RBM6P78332 1123 aaKnown RBP20.03■□□□□ 0.8
NUP54-213ENST00000513352 FAM98CQ17RN3 349 aaKnown RBP20.03■□□□□ 0.8
NUP54-213ENST00000513352 WNK3Q9BYP7 1800 aa20.02■□□□□ 0.8
NUP54-213ENST00000513352 MRS2Q9HD23 443 aa20.02■□□□□ 0.8
NUP54-213ENST00000513352 THRAP3Q9Y2W1 955 aaKnown RBP20.01■□□□□ 0.79
NUP54-213ENST00000513352 IGSF1Q8N6C5 1336 aa20.01■□□□□ 0.79
NUP54-213ENST00000513352 RGPD1P0DJD0 1748 aa20■□□□□ 0.79
NUP54-213ENST00000513352 HMOX1P09601 288 aa20■□□□□ 0.79
NUP54-213ENST00000513352 U2AF1L5P0DN76 240 aaPredicted RBP20■□□□□ 0.79
NUP54-213ENST00000513352 U2AF1Q01081 240 aaKnown RBP eCLIP20■□□□□ 0.79
NUP54-213ENST00000513352 RAPGEF4Q8WZA2 1011 aa20■□□□□ 0.79
NUP54-213ENST00000513352 WDR43Q15061 677 aaKnown RBP eCLIP19.99■□□□□ 0.79
NUP54-213ENST00000513352 CCDC184Q52MB2 194 aa19.99■□□□□ 0.79
NUP54-213ENST00000513352 SULT6B1Q6IMI4 303 aa19.99■□□□□ 0.79
NUP54-213ENST00000513352 IL2RBP14784 551 aa19.98■□□□□ 0.79
NUP54-213ENST00000513352 BARGINQ6ZT62 677 aa19.98■□□□□ 0.79
NUP54-213ENST00000513352 AEBP1Q8IUX7 1158 aa19.98■□□□□ 0.79
NUP54-213ENST00000513352 MIER1Q8N108 512 aa19.98■□□□□ 0.79
NUP54-213ENST00000513352 PARP4Q9UKK3 1724 aaKnown RBP19.97■□□□□ 0.79
NUP54-213ENST00000513352 TATP17735 454 aaPredicted RBP19.96■□□□□ 0.79
NUP54-213ENST00000513352 MEGF6O75095 1541 aa19.96■□□□□ 0.79
NUP54-213ENST00000513352 NCAPD2Q15021 1401 aa19.95■□□□□ 0.78
NUP54-213ENST00000513352 CDCA7Q9BWT1 371 aaPredicted RBP19.95■□□□□ 0.78
NUP54-213ENST00000513352 THSD7AQ9UPZ6 1657 aa19.94■□□□□ 0.78
NUP54-213ENST00000513352 SEPT12Q8IYM1 358 aa19.94■□□□□ 0.78
NUP54-213ENST00000513352 DISP2A7MBM2 1401 aa19.93■□□□□ 0.78
NUP54-213ENST00000513352 RGS12O14924 1447 aa19.93■□□□□ 0.78
NUP54-213ENST00000513352 LRRC37A3O60309 1634 aa19.93■□□□□ 0.78
NUP54-213ENST00000513352 OVOS2A0A0G2JMS6 1433 aa19.92■□□□□ 0.78
NUP54-213ENST00000513352 BRWD3Q6RI45 1802 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms