RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 TTLL8A6PVC2 850 aa8.68□□□□□ -1.02
NUP54-206ENST00000508465 PDE4DQ08499 809 aa8.68□□□□□ -1.02
NUP54-206ENST00000508465 RSPH6AQ9H0K4 717 aa8.68□□□□□ -1.02
NUP54-206ENST00000508465 PGPEP1Q9NXJ5 209 aa8.68□□□□□ -1.02
NUP54-206ENST00000508465 KCNMA1Q12791 1236 aa8.67□□□□□ -1.02
NUP54-206ENST00000508465 CARD14Q9BXL6 1004 aa8.67□□□□□ -1.02
NUP54-206ENST00000508465 RTL5Q5HYW3 569 aaPredicted RBP8.66□□□□□ -1.02
NUP54-206ENST00000508465 CLK2P49760 499 aaKnown RBP8.65□□□□□ -1.02
NUP54-206ENST00000508465 CDV3Q9UKY7 258 aaKnown RBP8.65□□□□□ -1.02
NUP54-206ENST00000508465 PTSQ03393 145 aa8.64□□□□□ -1.03
NUP54-206ENST00000508465 ERFEQ4G0M1 354 aa8.64□□□□□ -1.03
NUP54-206ENST00000508465 PPP1R26Q5T8A7 1209 aaPredicted RBP8.64□□□□□ -1.03
NUP54-206ENST00000508465 PDXDC2PQ6P474 469 aa8.64□□□□□ -1.03
NUP54-206ENST00000508465 FIGNL2A6NMB9 653 aa8.63□□□□□ -1.03
NUP54-206ENST00000508465 DHX9Q08211 1270 aaKnown RBP8.63□□□□□ -1.03
NUP54-206ENST00000508465 CNTNAP3BQ96NU0 1288 aa8.63□□□□□ -1.03
NUP54-206ENST00000508465 ARHGAP9Q9BRR9 750 aa8.63□□□□□ -1.03
NUP54-206ENST00000508465 CNTNAP3Q9BZ76 1288 aa8.63□□□□□ -1.03
NUP54-206ENST00000508465 CC2D2AQ9P2K1 1620 aa8.62□□□□□ -1.03
NUP54-206ENST00000508465 EIF4G1Q04637 1599 aaKnown RBP8.62□□□□□ -1.03
NUP54-206ENST00000508465 RNF225M0QZC1 329 aaPredicted RBP8.62□□□□□ -1.03
NUP54-206ENST00000508465 SPINT1O43278 529 aa8.62□□□□□ -1.03
NUP54-206ENST00000508465 Q6ZVU0 165 aa8.62□□□□□ -1.03
NUP54-206ENST00000508465 ZBTB33Q86T24 672 aa8.62□□□□□ -1.03
NUP54-206ENST00000508465 CTDSPL2Q05D32 466 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 TMEM151AQ8N4L1 468 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 CCDC155Q8N6L0 562 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 GPR161Q8N6U8 529 aaKnown RBP8.61□□□□□ -1.03
NUP54-206ENST00000508465 NANOS1Q8WY41 292 aaKnown RBP8.61□□□□□ -1.03
NUP54-206ENST00000508465 SLC10A4Q96EP9 437 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 KCTD15Q96SI1 283 aaPredicted RBP8.61□□□□□ -1.03
NUP54-206ENST00000508465 POLR3EQ9NVU0 708 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 CECR2Q9BXF3 1484 aa8.61□□□□□ -1.03
NUP54-206ENST00000508465 CBLBQ13191 982 aa8.6□□□□□ -1.03
NUP54-206ENST00000508465 FKBPLQ9UIM3 349 aa8.6□□□□□ -1.03
NUP54-206ENST00000508465 ADAMTS8Q9UP79 889 aa8.6□□□□□ -1.03
NUP54-206ENST00000508465 KCTD17Q8N5Z5 321 aa8.59□□□□□ -1.03
NUP54-206ENST00000508465 COL25A1Q9BXS0 654 aaPredicted RBP8.59□□□□□ -1.03
NUP54-206ENST00000508465 GDF11O95390 407 aa8.58□□□□□ -1.04
NUP54-206ENST00000508465 KRT76Q01546 638 aa8.58□□□□□ -1.04
NUP54-206ENST00000508465 SLC24A3Q9HC58 644 aa8.58□□□□□ -1.04
NUP54-206ENST00000508465 ZC3H4Q9UPT8 1303 aaKnown RBP8.57□□□□□ -1.04
NUP54-206ENST00000508465 SLC35F4A4IF30 521 aa8.57□□□□□ -1.04
NUP54-206ENST00000508465 RASSF7Q02833 373 aa8.57□□□□□ -1.04
NUP54-206ENST00000508465 PTK2Q05397 1052 aa8.57□□□□□ -1.04
NUP54-206ENST00000508465 ATP1B4Q9UN42 357 aaPredicted RBP8.57□□□□□ -1.04
NUP54-206ENST00000508465 SUZ12Q15022 739 aaKnown RBP8.56□□□□□ -1.04
NUP54-206ENST00000508465 SV2AQ7L0J3 742 aa8.56□□□□□ -1.04
NUP54-206ENST00000508465 SVOPQ8N4V2 548 aa8.56□□□□□ -1.04
NUP54-206ENST00000508465 LOC100996750A0A140TA64 210 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 CDC14CA4D256 554 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 ITGA6P23229 1130 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 GSK3AP49840 483 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 RELBQ01201 579 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 VWA5B2Q8N398 1253 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 KRTAP4-6Q9BYQ5 205 aa8.55□□□□□ -1.04
NUP54-206ENST00000508465 POLMQ9NP87 494 aaPredicted RBP8.55□□□□□ -1.04
NUP54-206ENST00000508465 INTS6LQ5JSJ4 861 aaKnown RBP8.54□□□□□ -1.04
NUP54-206ENST00000508465 PNMA1Q8ND90 353 aa8.54□□□□□ -1.04
NUP54-206ENST00000508465 LRRN4Q8WUT4 740 aa8.54□□□□□ -1.04
NUP54-206ENST00000508465 AGBL1Q96MI9 1066 aa8.54□□□□□ -1.04
NUP54-206ENST00000508465 GPSM3Q9Y4H4 160 aa8.54□□□□□ -1.04
NUP54-206ENST00000508465 CTSOP43234 321 aaPredicted RBP8.53□□□□□ -1.04
NUP54-206ENST00000508465 SKIV2LQ15477 1246 aaKnown RBP8.53□□□□□ -1.04
NUP54-206ENST00000508465 NBPF20Q3BBV1 942 aa8.53□□□□□ -1.04
NUP54-206ENST00000508465 ZNF385CQ66K41 422 aaPredicted RBP8.53□□□□□ -1.04
NUP54-206ENST00000508465 TRIM52Q96A61 297 aa8.53□□□□□ -1.04
NUP54-206ENST00000508465 INSM2Q96T92 566 aaPredicted RBP8.53□□□□□ -1.04
NUP54-206ENST00000508465 MARSP56192 900 aaKnown RBP8.52□□□□□ -1.05
NUP54-206ENST00000508465 NR6A1Q15406 480 aa8.52□□□□□ -1.05
NUP54-206ENST00000508465 RNFT1Q5M7Z0 435 aa8.52□□□□□ -1.05
NUP54-206ENST00000508465 SLURP2P0DP57 97 aa8.51□□□□□ -1.05
NUP54-206ENST00000508465 ZNF395Q9H8N7 513 aaPredicted RBP8.51□□□□□ -1.05
NUP54-206ENST00000508465 ADAM32Q8TC27 787 aa8.5□□□□□ -1.05
NUP54-206ENST00000508465 DZIP3Q86Y13 1208 aaKnown RBP8.49□□□□□ -1.05
NUP54-206ENST00000508465 RNF217Q8TC41 542 aa8.49□□□□□ -1.05
NUP54-206ENST00000508465 AP1G2O75843 785 aa8.48□□□□□ -1.05
NUP54-206ENST00000508465 PPP2R2DQ66LE6 453 aa8.48□□□□□ -1.05
NUP54-206ENST00000508465 SCARF2Q96GP6 870 aaPredicted RBP8.48□□□□□ -1.05
NUP54-206ENST00000508465 ARHGEF15O94989 841 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 ADH1AP07327 375 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 IRS1P35568 1242 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 RAB15P59190 212 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 SH3D19Q5HYK7 790 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 KANK3Q6NY19 840 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 ZNF784Q8NCA9 323 aaPredicted RBP8.47□□□□□ -1.05
NUP54-206ENST00000508465 WHAMMQ8TF30 809 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 OCSTAMPQ9BR26 566 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 TMPRSS4Q9NRS4 437 aa8.47□□□□□ -1.05
NUP54-206ENST00000508465 IGHA1P01876 353 aa8.46□□□□□ -1.06
NUP54-206ENST00000508465 PTGIRP43119 386 aa8.46□□□□□ -1.06
NUP54-206ENST00000508465 MAP3K10Q02779 954 aa8.46□□□□□ -1.06
NUP54-206ENST00000508465 LYSMD3Q7Z3D4 306 aa8.46□□□□□ -1.06
NUP54-206ENST00000508465 DDRGK1Q96HY6 314 aa8.46□□□□□ -1.06
NUP54-206ENST00000508465 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.46□□□□□ -1.06
NUP54-206ENST00000508465 DNMT3AQ9Y6K1 912 aaPredicted RBP8.46□□□□□ -1.06
NUP54-206ENST00000508465 SENP3-EIF4A1A0A087X0R7 540 aa8.45□□□□□ -1.06
NUP54-206ENST00000508465 ERVH48-1M5A8F1 160 aa8.45□□□□□ -1.06
NUP54-206ENST00000508465 ADAMTS2O95450 1211 aa8.45□□□□□ -1.06
NUP54-206ENST00000508465 SRSF11Q05519 484 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms