RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 KNSTRNQ9Y448 316 aa20.59■□□□□ 0.89
RNF4-210ENST00000508235 NSD2O96028 1365 aa20.58■□□□□ 0.88
RNF4-210ENST00000508235 STRN4Q9NRL3 753 aa20.57■□□□□ 0.88
RNF4-210ENST00000508235 RGPD5Q99666 1765 aa20.56■□□□□ 0.88
RNF4-210ENST00000508235 COL5A2P05997 1499 aaPredicted RBP20.56■□□□□ 0.88
RNF4-210ENST00000508235 GLI3P10071 1580 aa20.54■□□□□ 0.88
RNF4-210ENST00000508235 SPATA31A5Q5VU36 1347 aa20.53■□□□□ 0.88
RNF4-210ENST00000508235 SPATA31A7Q8IWB4 1347 aa20.53■□□□□ 0.88
RNF4-210ENST00000508235 BLMP54132 1417 aaPredicted RBP20.53■□□□□ 0.88
RNF4-210ENST00000508235 RTL1A6NKG5 1358 aa20.51■□□□□ 0.87
RNF4-210ENST00000508235 AMPHP49418 695 aa20.51■□□□□ 0.87
RNF4-210ENST00000508235 AXIN2Q9Y2T1 843 aa20.51■□□□□ 0.87
RNF4-210ENST00000508235 MAP3K19Q56UN5 1328 aa20.51■□□□□ 0.87
RNF4-210ENST00000508235 SPATA31A1Q5TZJ5 1347 aa20.51■□□□□ 0.87
RNF4-210ENST00000508235 KIF24Q5T7B8 1368 aa20.5■□□□□ 0.87
RNF4-210ENST00000508235 LARP1Q6PKG0 1096 aaKnown RBP20.5■□□□□ 0.87
RNF4-210ENST00000508235 IP6K1Q92551 441 aa20.5■□□□□ 0.87
RNF4-210ENST00000508235 RGS12O14924 1447 aa20.5■□□□□ 0.87
RNF4-210ENST00000508235 CRB1P82279 1406 aa20.5■□□□□ 0.87
RNF4-210ENST00000508235 WDR17Q8IZU2 1322 aa20.5■□□□□ 0.87
RNF4-210ENST00000508235 MAP2P11137 1827 aaKnown RBP20.49■□□□□ 0.87
RNF4-210ENST00000508235 PER1O15534 1290 aaPredicted RBP20.49■□□□□ 0.87
RNF4-210ENST00000508235 CSB-PGBD3P0DP91 1061 aa20.49■□□□□ 0.87
RNF4-210ENST00000508235 THRAP3Q9Y2W1 955 aaKnown RBP20.49■□□□□ 0.87
RNF4-210ENST00000508235 ONECUT3O60422 494 aaPredicted RBP20.48■□□□□ 0.87
RNF4-210ENST00000508235 AMER1Q5JTC6 1135 aaPredicted RBP20.48■□□□□ 0.87
RNF4-210ENST00000508235 TOM1L2Q6ZVM7 507 aa20.48■□□□□ 0.87
RNF4-210ENST00000508235 HOXC9P31274 260 aa20.47■□□□□ 0.87
RNF4-210ENST00000508235 RRS1Q15050 365 aaKnown RBP20.47■□□□□ 0.87
RNF4-210ENST00000508235 MORC1Q86VD1 984 aa20.47■□□□□ 0.87
RNF4-210ENST00000508235 TCP11L2Q8N4U5 519 aa20.47■□□□□ 0.87
RNF4-210ENST00000508235 FAM208AQ9UK61 1670 aaKnown RBP20.47■□□□□ 0.87
RNF4-210ENST00000508235 NPC1L1Q9UHC9 1359 aa20.46■□□□□ 0.87
RNF4-210ENST00000508235 BARGINQ6ZT62 677 aa20.46■□□□□ 0.87
RNF4-210ENST00000508235 USP35Q9P2H5 1018 aa20.46■□□□□ 0.87
RNF4-210ENST00000508235 ERBB3P21860 1342 aa20.46■□□□□ 0.87
RNF4-210ENST00000508235 FLT4P35916 1363 aa20.46■□□□□ 0.87
RNF4-210ENST00000508235 A0A0G2JS52 829 aa20.45■□□□□ 0.86
RNF4-210ENST00000508235 FBLN1P23142 703 aa20.45■□□□□ 0.86
RNF4-210ENST00000508235 MYT1Q01538 1121 aa20.45■□□□□ 0.86
RNF4-210ENST00000508235 FAM98CQ17RN3 349 aaKnown RBP20.45■□□□□ 0.86
RNF4-210ENST00000508235 SEPT12Q8IYM1 358 aa20.44■□□□□ 0.86
RNF4-210ENST00000508235 ANKRD24Q8TF21 1146 aa20.44■□□□□ 0.86
RNF4-210ENST00000508235 SMG6Q86US8 1419 aaKnown RBP20.44■□□□□ 0.86
RNF4-210ENST00000508235 CARD10Q9BWT7 1032 aa20.43■□□□□ 0.86
RNF4-210ENST00000508235 THSD7AQ9UPZ6 1657 aa20.42■□□□□ 0.86
RNF4-210ENST00000508235 PEAK1Q9H792 1746 aa20.42■□□□□ 0.86
RNF4-210ENST00000508235 TNNT2P45379 298 aaPredicted RBP20.42■□□□□ 0.86
RNF4-210ENST00000508235 INSRP06213 1382 aa20.42■□□□□ 0.86
RNF4-210ENST00000508235 BRWD3Q6RI45 1802 aa20.41■□□□□ 0.86
RNF4-210ENST00000508235 PPM1GO15355 546 aaPredicted RBP20.41■□□□□ 0.86
RNF4-210ENST00000508235 CC2D1BQ5T0F9 858 aaKnown RBP20.41■□□□□ 0.86
RNF4-210ENST00000508235 CDCA7Q9BWT1 371 aaPredicted RBP20.41■□□□□ 0.86
RNF4-210ENST00000508235 POLKQ9UBT6 870 aa20.41■□□□□ 0.86
RNF4-210ENST00000508235 WNK3Q9BYP7 1800 aa20.41■□□□□ 0.86
RNF4-210ENST00000508235 SOCS7O14512 581 aa20.4■□□□□ 0.86
RNF4-210ENST00000508235 NLRP2Q9NX02 1062 aa20.4■□□□□ 0.86
RNF4-210ENST00000508235 EMILIN1Q9Y6C2 1016 aa20.4■□□□□ 0.86
RNF4-210ENST00000508235 LTV1Q96GA3 475 aaPredicted RBP20.39■□□□□ 0.85
RNF4-210ENST00000508235 PARP4Q9UKK3 1724 aaKnown RBP20.39■□□□□ 0.85
RNF4-210ENST00000508235 HSP90AB2PQ58FF8 381 aa20.37■□□□□ 0.85
RNF4-210ENST00000508235 KRT27Q7Z3Y8 459 aa20.36■□□□□ 0.85
RNF4-210ENST00000508235 RGPD2P0DJD1 1756 aa20.35■□□□□ 0.85
RNF4-210ENST00000508235 DDX10Q13206 875 aaKnown RBP20.33■□□□□ 0.85
RNF4-210ENST00000508235 PDE3BQ13370 1112 aa20.33■□□□□ 0.85
RNF4-210ENST00000508235 LRRC37A3O60309 1634 aa20.32■□□□□ 0.84
RNF4-210ENST00000508235 ZNF316A6NFI3 1004 aaPredicted RBP20.32■□□□□ 0.84
RNF4-210ENST00000508235 IL2RBP14784 551 aa20.32■□□□□ 0.84
RNF4-210ENST00000508235 DISP2A7MBM2 1401 aa20.31■□□□□ 0.84
RNF4-210ENST00000508235 CNGB1Q14028 1251 aaPredicted RBP20.31■□□□□ 0.84
RNF4-210ENST00000508235 DDB1Q16531 1140 aa20.31■□□□□ 0.84
RNF4-210ENST00000508235 NBPF6Q5VWK0 638 aa20.3■□□□□ 0.84
RNF4-210ENST00000508235 NBPF4Q96M43 638 aa20.3■□□□□ 0.84
RNF4-210ENST00000508235 MTHFSP49914 203 aa20.29■□□□□ 0.84
RNF4-210ENST00000508235 EXOC5O00471 708 aa20.28■□□□□ 0.84
RNF4-210ENST00000508235 EIF4A2Q14240 407 aaKnown RBP20.27■□□□□ 0.84
RNF4-210ENST00000508235 FAM196AQ6ZSG2 479 aa20.26■□□□□ 0.83
RNF4-210ENST00000508235 CCDC125Q86Z20 511 aa20.26■□□□□ 0.83
RNF4-210ENST00000508235 RAPGEF4Q8WZA2 1011 aa20.26■□□□□ 0.83
RNF4-210ENST00000508235 TNS2Q63HR2 1409 aa20.26■□□□□ 0.83
RNF4-210ENST00000508235 UPF1Q92900 1129 aaKnown RBP eCLIP20.25■□□□□ 0.832e-6■■■■■ 41.6
RNF4-210ENST00000508235 NCAPD2Q15021 1401 aa20.25■□□□□ 0.83
RNF4-210ENST00000508235 EYA1Q99502 592 aa20.24■□□□□ 0.83
RNF4-210ENST00000508235 PARD3Q8TEW0 1356 aa20.23■□□□□ 0.83
RNF4-210ENST00000508235 OVOS2A0A0G2JMS6 1433 aa20.23■□□□□ 0.83
RNF4-210ENST00000508235 TATP17735 454 aaPredicted RBP20.23■□□□□ 0.83
RNF4-210ENST00000508235 USHBP1Q8N6Y0 703 aa20.23■□□□□ 0.83
RNF4-210ENST00000508235 CFAP53Q96M91 514 aa20.23■□□□□ 0.83
RNF4-210ENST00000508235 PPP2R1AP30153 589 aa20.22■□□□□ 0.83
RNF4-210ENST00000508235 RALBP1Q15311 655 aa20.22■□□□□ 0.83
RNF4-210ENST00000508235 IGSF1Q8N6C5 1336 aa20.22■□□□□ 0.83
RNF4-210ENST00000508235 MEGF6O75095 1541 aa20.21■□□□□ 0.83
RNF4-210ENST00000508235 RGPD1P0DJD0 1748 aa20.2■□□□□ 0.82
RNF4-210ENST00000508235 DIAPH1O60610 1272 aaKnown RBP20.2■□□□□ 0.82
RNF4-210ENST00000508235 IL13P35225 146 aa20.2■□□□□ 0.82
RNF4-210ENST00000508235 SF3B2Q13435 895 aaKnown RBP20.2■□□□□ 0.82
RNF4-210ENST00000508235 FAM182BQ5T319 152 aa20.2■□□□□ 0.82
RNF4-210ENST00000508235 PLEKHG2Q9H7P9 1386 aa20.2■□□□□ 0.82
RNF4-210ENST00000508235 BCL9O00512 1426 aa20.19■□□□□ 0.82
RNF4-210ENST00000508235 ZCRB1Q8TBF4 217 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms