RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 ARHGAP9Q9BRR9 750 aa10.63□□□□□ -0.71
VPS50-219ENST00000495039 PPP1R26Q5T8A7 1209 aaPredicted RBP10.62□□□□□ -0.71
VPS50-219ENST00000495039 SLC10A4Q96EP9 437 aa10.62□□□□□ -0.71
VPS50-219ENST00000495039 FKBPLQ9UIM3 349 aa10.62□□□□□ -0.71
VPS50-219ENST00000495039 CDV3Q9UKY7 258 aaKnown RBP10.62□□□□□ -0.71
VPS50-219ENST00000495039 Q6ZVU0 165 aa10.6□□□□□ -0.71
VPS50-219ENST00000495039 ZC3H4Q9UPT8 1303 aaKnown RBP10.59□□□□□ -0.71
VPS50-219ENST00000495039 DHX9Q08211 1270 aaKnown RBP10.59□□□□□ -0.71
VPS50-219ENST00000495039 ZBTB33Q86T24 672 aa10.59□□□□□ -0.71
VPS50-219ENST00000495039 LRRN4Q8WUT4 740 aa10.59□□□□□ -0.71
VPS50-219ENST00000495039 KCTD15Q96SI1 283 aaPredicted RBP10.59□□□□□ -0.71
VPS50-219ENST00000495039 CBLBQ13191 982 aa10.58□□□□□ -0.72
VPS50-219ENST00000495039 SPINT1O43278 529 aa10.57□□□□□ -0.72
VPS50-219ENST00000495039 PTSQ03393 145 aa10.57□□□□□ -0.72
VPS50-219ENST00000495039 SKIV2LQ15477 1246 aaKnown RBP10.57□□□□□ -0.72
VPS50-219ENST00000495039 SH3D19Q5HYK7 790 aa10.56□□□□□ -0.72
VPS50-219ENST00000495039 FIGNL2A6NMB9 653 aa10.55□□□□□ -0.72
VPS50-219ENST00000495039 PTK2Q05397 1052 aa10.55□□□□□ -0.72
VPS50-219ENST00000495039 NR6A1Q15406 480 aa10.55□□□□□ -0.72
VPS50-219ENST00000495039 GPSM3Q9Y4H4 160 aa10.55□□□□□ -0.72
VPS50-219ENST00000495039 ATP1B4Q9UN42 357 aaPredicted RBP10.54□□□□□ -0.72
VPS50-219ENST00000495039 INTS6LQ5JSJ4 861 aaKnown RBP10.53□□□□□ -0.72
VPS50-219ENST00000495039 PPP2R2DQ66LE6 453 aa10.53□□□□□ -0.72
VPS50-219ENST00000495039 CCDC155Q8N6L0 562 aa10.52□□□□□ -0.73
VPS50-219ENST00000495039 GPR161Q8N6U8 529 aaKnown RBP10.52□□□□□ -0.73
VPS50-219ENST00000495039 NANOS1Q8WY41 292 aaKnown RBP10.52□□□□□ -0.73
VPS50-219ENST00000495039 DDRGK1Q96HY6 314 aa10.52□□□□□ -0.73
VPS50-219ENST00000495039 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS50-219ENST00000495039 KRT76Q01546 638 aa10.51□□□□□ -0.73
VPS50-219ENST00000495039 NBPF20Q3BBV1 942 aa10.51□□□□□ -0.73
VPS50-219ENST00000495039 PNMA1Q8ND90 353 aa10.51□□□□□ -0.73
VPS50-219ENST00000495039 CNTNAP3BQ96NU0 1288 aa10.51□□□□□ -0.73
VPS50-219ENST00000495039 CNTNAP3Q9BZ76 1288 aa10.51□□□□□ -0.73
VPS50-219ENST00000495039 KCNMA1Q12791 1236 aa10.5□□□□□ -0.73
VPS50-219ENST00000495039 FBXO31Q5XUX0 539 aaPredicted RBP10.5□□□□□ -0.73
VPS50-219ENST00000495039 PROCA1Q8NCQ7 364 aaPredicted RBP10.5□□□□□ -0.73
VPS50-219ENST00000495039 ADAM32Q8TC27 787 aa10.5□□□□□ -0.73
VPS50-219ENST00000495039 AGBL1Q96MI9 1066 aa10.5□□□□□ -0.73
VPS50-219ENST00000495039 OCSTAMPQ9BR26 566 aa10.5□□□□□ -0.73
VPS50-219ENST00000495039 KDM4CQ9H3R0 1056 aa10.5□□□□□ -0.73
VPS50-219ENST00000495039 SLC35F4A4IF30 521 aa10.49□□□□□ -0.73
VPS50-219ENST00000495039 AP1G2O75843 785 aa10.49□□□□□ -0.73
VPS50-219ENST00000495039 RELBQ01201 579 aa10.49□□□□□ -0.73
VPS50-219ENST00000495039 COL25A1Q9BXS0 654 aaPredicted RBP10.49□□□□□ -0.73
VPS50-219ENST00000495039 CTSOP43234 321 aaPredicted RBP10.48□□□□□ -0.73
VPS50-219ENST00000495039 POLMQ9NP87 494 aaPredicted RBP10.48□□□□□ -0.73
VPS50-219ENST00000495039 INSM2Q96T92 566 aaPredicted RBP10.47□□□□□ -0.73
VPS50-219ENST00000495039 GPBP1L1Q9HC44 474 aaPredicted RBP10.47□□□□□ -0.73
VPS50-219ENST00000495039 ITGA6P23229 1130 aa10.46□□□□□ -0.73
VPS50-219ENST00000495039 FAM117AQ9C073 453 aa10.46□□□□□ -0.73
VPS50-219ENST00000495039 RNF225M0QZC1 329 aaPredicted RBP10.45□□□□□ -0.74
VPS50-219ENST00000495039 CDC14CA4D256 554 aa10.44□□□□□ -0.74
VPS50-219ENST00000495039 ZNF784Q8NCA9 323 aaPredicted RBP10.44□□□□□ -0.74
VPS50-219ENST00000495039 RNF217Q8TC41 542 aa10.44□□□□□ -0.74
VPS50-219ENST00000495039 ZNF395Q9H8N7 513 aaPredicted RBP10.44□□□□□ -0.74
VPS50-219ENST00000495039 TMPRSS4Q9NRS4 437 aa10.44□□□□□ -0.74
VPS50-219ENST00000495039 ADH1AP07327 375 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 USP17L8P0C7I0 530 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 GSK3AP49840 483 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 RAB15P59190 212 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 RNFT1Q5M7Z0 435 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 SV2AQ7L0J3 742 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 DZIP3Q86Y13 1208 aaKnown RBP10.43□□□□□ -0.74
VPS50-219ENST00000495039 EPS8L1Q8TE68 723 aa10.43□□□□□ -0.74
VPS50-219ENST00000495039 VWA5B2Q8N398 1253 aa10.42□□□□□ -0.74
VPS50-219ENST00000495039 SVOPQ8N4V2 548 aa10.42□□□□□ -0.74
VPS50-219ENST00000495039 HMX1Q9NP08 348 aaPredicted RBP10.42□□□□□ -0.74
VPS50-219ENST00000495039 ADAMTS8Q9UP79 889 aa10.42□□□□□ -0.74
VPS50-219ENST00000495039 ZNF385CQ66K41 422 aaPredicted RBP10.41□□□□□ -0.74
VPS50-219ENST00000495039 TRIM52Q96A61 297 aa10.41□□□□□ -0.74
VPS50-219ENST00000495039 ERVH48-1M5A8F1 160 aa10.4□□□□□ -0.74
VPS50-219ENST00000495039 LILRA1O75019 489 aa10.4□□□□□ -0.74
VPS50-219ENST00000495039 SLURP2P0DP57 97 aa10.4□□□□□ -0.74
VPS50-219ENST00000495039 TMEM151AQ8N4L1 468 aa10.4□□□□□ -0.74
VPS50-219ENST00000495039 ESPNB1AK53 854 aa10.39□□□□□ -0.75
VPS50-219ENST00000495039 PTGIRP43119 386 aa10.39□□□□□ -0.75
VPS50-219ENST00000495039 RASSF7Q02833 373 aa10.39□□□□□ -0.75
VPS50-219ENST00000495039 KCTD17Q8N5Z5 321 aa10.39□□□□□ -0.75
VPS50-219ENST00000495039 SENP3-EIF4A1A0A087X0R7 540 aa10.38□□□□□ -0.75
VPS50-219ENST00000495039 GDF11O95390 407 aa10.38□□□□□ -0.75
VPS50-219ENST00000495039 FOXD4L5Q5VV16 416 aaPredicted RBP10.38□□□□□ -0.75
VPS50-219ENST00000495039 SEPT12Q8IYM1 358 aa10.38□□□□□ -0.75
VPS50-219ENST00000495039 ADD1P35611 737 aaKnown RBP10.37□□□□□ -0.75
VPS50-219ENST00000495039 RFC5P40937 340 aa10.37□□□□□ -0.75
VPS50-219ENST00000495039 LYSMD3Q7Z3D4 306 aa10.36□□□□□ -0.75
VPS50-219ENST00000495039 KDF1Q8NAX2 398 aaPredicted RBP10.35□□□□□ -0.75
VPS50-219ENST00000495039 WHAMMQ8TF30 809 aa10.34□□□□□ -0.75
VPS50-219ENST00000495039 CYLDQ9NQC7 956 aa10.34□□□□□ -0.75
VPS50-219ENST00000495039 LOC100996750A0A140TA64 210 aa10.32□□□□□ -0.76
VPS50-219ENST00000495039 ARHGEF15O94989 841 aa10.32□□□□□ -0.76
VPS50-219ENST00000495039 TRIM34Q9BYJ4 488 aa10.32□□□□□ -0.76
VPS50-219ENST00000495039 KRTAP4-6Q9BYQ5 205 aa10.32□□□□□ -0.76
VPS50-219ENST00000495039 ADAMTS2O95450 1211 aa10.31□□□□□ -0.76
VPS50-219ENST00000495039 RNF144AP50876 292 aaPredicted RBP10.31□□□□□ -0.76
VPS50-219ENST00000495039 MARSP56192 900 aaKnown RBP10.31□□□□□ -0.76
VPS50-219ENST00000495039 SRSF11Q05519 484 aaKnown RBP10.31□□□□□ -0.76
VPS50-219ENST00000495039 GOPCQ9HD26 462 aa10.31□□□□□ -0.76
VPS50-219ENST00000495039 ZBBXA8MT70 800 aa10.3□□□□□ -0.76
VPS50-219ENST00000495039 ATP5J2-PTCD1G3V325 749 aa10.3□□□□□ -0.76
VPS50-219ENST00000495039 SUZ12Q15022 739 aaKnown RBP10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms