RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CPDO75976 1380 aa25.98■■□□□ 1.75
USP39-218ENST00000493829 ADAMTS2O95450 1211 aa25.98■■□□□ 1.75
USP39-218ENST00000493829 FAM9BQ8IZU0 186 aa25.97■■□□□ 1.75
USP39-218ENST00000493829 LTV1Q96GA3 475 aaPredicted RBP25.97■■□□□ 1.75
USP39-218ENST00000493829 COL18A1P39060 1754 aa25.97■■□□□ 1.75
USP39-218ENST00000493829 FBXO41Q8TF61 875 aa25.96■■□□□ 1.75
USP39-218ENST00000493829 IP6K1Q92551 441 aa25.96■■□□□ 1.75
USP39-218ENST00000493829 KIF24Q5T7B8 1368 aa25.95■■□□□ 1.75
USP39-218ENST00000493829 DIAPH1O60610 1272 aaKnown RBP25.95■■□□□ 1.74
USP39-218ENST00000493829 LMO7Q8WWI1 1683 aa25.93■■□□□ 1.74
USP39-218ENST00000493829 U2SURPO15042 1029 aaKnown RBP25.93■■□□□ 1.74
USP39-218ENST00000493829 EIF4A2Q14240 407 aaKnown RBP25.93■■□□□ 1.74
USP39-218ENST00000493829 WDR43Q15061 677 aaKnown RBP eCLIP25.93■■□□□ 1.74
USP39-218ENST00000493829 AXIN2Q9Y2T1 843 aa25.93■■□□□ 1.74
USP39-218ENST00000493829 LRP6O75581 1613 aa25.93■■□□□ 1.74
USP39-218ENST00000493829 INSRP06213 1382 aa25.93■■□□□ 1.74
USP39-218ENST00000493829 PNISRQ8TF01 805 aaKnown RBP25.93■■□□□ 1.74
USP39-218ENST00000493829 COL14A1Q05707 1796 aaKnown RBP25.92■■□□□ 1.74
USP39-218ENST00000493829 BLMP54132 1417 aaPredicted RBP25.91■■□□□ 1.74
USP39-218ENST00000493829 ABCC6O95255 1503 aa25.91■■□□□ 1.74
USP39-218ENST00000493829 PLCH1Q4KWH8 1693 aa25.91■■□□□ 1.74
USP39-218ENST00000493829 FAM83GA6ND36 823 aa25.9■■□□□ 1.74
USP39-218ENST00000493829 SPATA31A6Q5VVP1 1343 aa25.9■■□□□ 1.74
USP39-218ENST00000493829 IL13P35225 146 aa25.9■■□□□ 1.74
USP39-218ENST00000493829 CAMTA1Q9Y6Y1 1673 aa25.89■■□□□ 1.73
USP39-218ENST00000493829 U2AF1L5P0DN76 240 aaPredicted RBP25.88■■□□□ 1.73
USP39-218ENST00000493829 U2AF1Q01081 240 aaKnown RBP eCLIP25.88■■□□□ 1.73
USP39-218ENST00000493829 ANKRD24Q8TF21 1146 aa25.88■■□□□ 1.73
USP39-218ENST00000493829 NUDCQ9Y266 331 aa25.88■■□□□ 1.73
USP39-218ENST00000493829 RGPD2P0DJD1 1756 aa25.88■■□□□ 1.73
USP39-218ENST00000493829 RGPD1P0DJD0 1748 aa25.87■■□□□ 1.73
USP39-218ENST00000493829 ADAMTS8Q9UP79 889 aa25.86■■□□□ 1.73
USP39-218ENST00000493829 COL5A2P05997 1499 aaPredicted RBP25.85■■□□□ 1.73
USP39-218ENST00000493829 CSB-PGBD3P0DP91 1061 aa25.84■■□□□ 1.73
USP39-218ENST00000493829 ERBB3P21860 1342 aa25.84■■□□□ 1.73
USP39-218ENST00000493829 HMOX1P09601 288 aa25.83■■□□□ 1.73
USP39-218ENST00000493829 C8orf37Q96NL8 207 aa25.83■■□□□ 1.73
USP39-218ENST00000493829 STRN4Q9NRL3 753 aa25.83■■□□□ 1.73
USP39-218ENST00000493829 BTG4Q9NY30 223 aa25.83■■□□□ 1.73
USP39-218ENST00000493829 MEX3CQ5U5Q3 659 aaKnown RBP25.83■■□□□ 1.73
USP39-218ENST00000493829 USHBP1Q8N6Y0 703 aa25.83■■□□□ 1.73
USP39-218ENST00000493829 YTHDC1Q96MU7 727 aaKnown RBP25.83■■□□□ 1.73
USP39-218ENST00000493829 SENP3-EIF4A1A0A087X0R7 540 aa25.82■■□□□ 1.72
USP39-218ENST00000493829 FAM208AQ9UK61 1670 aaKnown RBP25.81■■□□□ 1.72
USP39-218ENST00000493829 CCDC146Q8IYE0 955 aa25.81■■□□□ 1.72
USP39-218ENST00000493829 EYA1Q99502 592 aa25.81■■□□□ 1.72
USP39-218ENST00000493829 AEBP1Q8IUX7 1158 aa25.8■■□□□ 1.72
USP39-218ENST00000493829 NRAPQ86VF7 1730 aa25.8■■□□□ 1.72
USP39-218ENST00000493829 NLRP2Q9NX02 1062 aa25.79■■□□□ 1.72
USP39-218ENST00000493829 IGSF1Q8N6C5 1336 aa25.78■■□□□ 1.72
USP39-218ENST00000493829 EVA1CP58658 441 aa25.78■■□□□ 1.72
USP39-218ENST00000493829 NBPF6Q5VWK0 638 aa25.78■■□□□ 1.72
USP39-218ENST00000493829 SULT6B1Q6IMI4 303 aa25.78■■□□□ 1.72
USP39-218ENST00000493829 NBPF4Q96M43 638 aa25.78■■□□□ 1.72
USP39-218ENST00000493829 NGLY1Q96IV0 654 aa25.77■■□□□ 1.72
USP39-218ENST00000493829 NWD2Q9ULI1 1742 aa25.77■■□□□ 1.72
USP39-218ENST00000493829 WDR17Q8IZU2 1322 aa25.76■■□□□ 1.71
USP39-218ENST00000493829 LARP1Q6PKG0 1096 aaKnown RBP25.75■■□□□ 1.71
USP39-218ENST00000493829 TOM1L2Q6ZVM7 507 aa25.75■■□□□ 1.71
USP39-218ENST00000493829 SLIT2O94813 1529 aa25.75■■□□□ 1.71
USP39-218ENST00000493829 RSPH6AQ9H0K4 717 aa25.74■■□□□ 1.71
USP39-218ENST00000493829 PRKAR2BP31323 418 aa25.74■■□□□ 1.71
USP39-218ENST00000493829 USP35Q9P2H5 1018 aa25.71■■□□□ 1.71
USP39-218ENST00000493829 KDRP35968 1356 aa25.7■■□□□ 1.7
USP39-218ENST00000493829 CRB1P82279 1406 aa25.7■■□□□ 1.7
USP39-218ENST00000493829 FCHSD2O94868 740 aa25.69■■□□□ 1.7
USP39-218ENST00000493829 NCAPD2Q15021 1401 aa25.69■■□□□ 1.7
USP39-218ENST00000493829 MAPK8IP3Q9UPT6 1336 aa25.69■■□□□ 1.7
USP39-218ENST00000493829 HNRNPUQ00839 825 aaKnown RBP eCLIP25.68■■□□□ 1.7
USP39-218ENST00000493829 AFF2P51816 1311 aa25.68■■□□□ 1.7
USP39-218ENST00000493829 RUNDC1Q96C34 613 aa25.68■■□□□ 1.7
USP39-218ENST00000493829 PLEKHF1Q96S99 279 aa25.68■■□□□ 1.7
USP39-218ENST00000493829 BCL9LQ86UU0 1499 aa25.67■■□□□ 1.7
USP39-218ENST00000493829 CCDC9Q9Y3X0 531 aaKnown RBP25.67■■□□□ 1.7
USP39-218ENST00000493829 USP21Q9UK80 565 aa25.66■■□□□ 1.7
USP39-218ENST00000493829 SALL2Q9Y467 1007 aaPredicted RBP25.66■■□□□ 1.7
USP39-218ENST00000493829 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.66■■□□□ 1.7
USP39-218ENST00000493829 MEGF6O75095 1541 aa25.65■■□□□ 1.7
USP39-218ENST00000493829 UNC5CLQ8IV45 518 aa25.65■■□□□ 1.7
USP39-218ENST00000493829 PHACTR3Q96KR7 559 aa25.65■■□□□ 1.7
USP39-218ENST00000493829 APAF1O14727 1248 aa25.64■■□□□ 1.7
USP39-218ENST00000493829 FNBP4Q8N3X1 1017 aaPredicted RBP25.64■■□□□ 1.7
USP39-218ENST00000493829 CARD10Q9BWT7 1032 aa25.64■■□□□ 1.7
USP39-218ENST00000493829 PNNQ9H307 717 aaKnown RBP25.64■■□□□ 1.7
USP39-218ENST00000493829 RRP7AQ9Y3A4 280 aaKnown RBP25.64■■□□□ 1.7
USP39-218ENST00000493829 NEFMP07197 916 aa25.64■■□□□ 1.69
USP39-218ENST00000493829 NEUROD2Q15784 382 aa25.62■■□□□ 1.69
USP39-218ENST00000493829 TCP11L2Q8N4U5 519 aa25.62■■□□□ 1.69
USP39-218ENST00000493829 WNK3Q9BYP7 1800 aa25.62■■□□□ 1.69
USP39-218ENST00000493829 PARP4Q9UKK3 1724 aaKnown RBP25.62■■□□□ 1.69
USP39-218ENST00000493829 RAPGEF4Q8WZA2 1011 aa25.61■■□□□ 1.69
USP39-218ENST00000493829 ILDR1Q86SU0 546 aaPredicted RBP25.59■■□□□ 1.69
USP39-218ENST00000493829 SPATA31A1Q5TZJ5 1347 aa25.59■■□□□ 1.69
USP39-218ENST00000493829 SPATA31A5Q5VU36 1347 aa25.59■■□□□ 1.69
USP39-218ENST00000493829 SPATA31A7Q8IWB4 1347 aa25.59■■□□□ 1.69
USP39-218ENST00000493829 TATP17735 454 aaPredicted RBP25.58■■□□□ 1.68
USP39-218ENST00000493829 VPS72Q15906 364 aa25.57■■□□□ 1.68
USP39-218ENST00000493829 MTHFSDQ2M296 383 aaKnown RBP25.56■■□□□ 1.68
USP39-218ENST00000493829 DLG5Q8TDM6 1919 aa25.56■■□□□ 1.68
USP39-218ENST00000493829 OVOS2A0A0G2JMS6 1433 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms