RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 CGNL1Q0VF96 1302 aa22.44■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 ZEB1P37275 1124 aaPredicted RBP22.43■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 SPATA31A5Q5VU36 1347 aa22.42■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 WASHC2AQ641Q2 1341 aa22.42■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 SPATA31A7Q8IWB4 1347 aa22.42■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 SOCS7O14512 581 aa22.42■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 LARP1Q6PKG0 1096 aaKnown RBP22.4■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 AXIN2Q9Y2T1 843 aa22.4■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 SPATA31A1Q5TZJ5 1347 aa22.39■■□□□ 1.18
MSH5-SAPCD1-206ENST00000491552 RGPD5Q99666 1765 aa22.39■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 ANKRD26Q9UPS8 1709 aa22.39■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 CRB1P82279 1406 aa22.37■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 MAP3K19Q56UN5 1328 aa22.36■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 FAM98CQ17RN3 349 aaKnown RBP22.36■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 NSD2O96028 1365 aa22.36■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 WDR17Q8IZU2 1322 aa22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 BLMP54132 1417 aaPredicted RBP22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 ONECUT3O60422 494 aaPredicted RBP22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 FBLN1P23142 703 aa22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 SEPT12Q8IYM1 358 aa22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 KNSTRNQ9Y448 316 aa22.35■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 THSD7AQ9UPZ6 1657 aa22.34■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 USP35Q9P2H5 1018 aa22.34■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 RTL1A6NKG5 1358 aa22.34■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 A0A0G2JS52 829 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 CSB-PGBD3P0DP91 1061 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 AMPHP49418 695 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 MYT1Q01538 1121 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 RRS1Q15050 365 aaKnown RBP22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 TOM1L2Q6ZVM7 507 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 IP6K1Q92551 441 aa22.33■■□□□ 1.17
MSH5-SAPCD1-206ENST00000491552 TCP11L2Q8N4U5 519 aa22.32■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 THRAP3Q9Y2W1 955 aaKnown RBP22.32■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 ERBB3P21860 1342 aa22.31■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 HOXC9P31274 260 aa22.31■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 BARGINQ6ZT62 677 aa22.31■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 BRWD3Q6RI45 1802 aa22.31■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 ANKRD24Q8TF21 1146 aa22.3■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 KIF24Q5T7B8 1368 aa22.29■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 PEAK1Q9H792 1746 aa22.28■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 PER1O15534 1290 aaPredicted RBP22.28■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 AMER1Q5JTC6 1135 aaPredicted RBP22.28■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 CARD10Q9BWT7 1032 aa22.28■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 FLT4P35916 1363 aa22.27■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 FAM208AQ9UK61 1670 aaKnown RBP22.27■■□□□ 1.16
MSH5-SAPCD1-206ENST00000491552 WNK3Q9BYP7 1800 aa22.27■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 EMILIN1Q9Y6C2 1016 aa22.26■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 TNNT2P45379 298 aaPredicted RBP22.25■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 KRT27Q7Z3Y8 459 aa22.25■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 MORC1Q86VD1 984 aa22.25■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 LTV1Q96GA3 475 aaPredicted RBP22.25■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 PARP4Q9UKK3 1724 aaKnown RBP22.24■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 NLRP2Q9NX02 1062 aa22.24■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 INSRP06213 1382 aa22.24■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 SMG6Q86US8 1419 aaKnown RBP22.23■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 MAP2P11137 1827 aaKnown RBP22.23■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 POLKQ9UBT6 870 aa22.22■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 NPC1L1Q9UHC9 1359 aa22.22■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 LRRC37A3O60309 1634 aa22.21■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 PPM1GO15355 546 aaPredicted RBP22.21■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 HSP90AB2PQ58FF8 381 aa22.21■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 DISP2A7MBM2 1401 aa22.21■■□□□ 1.15
MSH5-SAPCD1-206ENST00000491552 CC2D1BQ5T0F9 858 aaKnown RBP22.2■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 UPF1Q92900 1129 aaKnown RBP eCLIP22.2■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 CDCA7Q9BWT1 371 aaPredicted RBP22.2■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 RGPD2P0DJD1 1756 aa22.17■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 PDE3BQ13370 1112 aa22.17■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 DDB1Q16531 1140 aa22.15■■□□□ 1.14
MSH5-SAPCD1-206ENST00000491552 IL2RBP14784 551 aa22.14■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 TNS2Q63HR2 1409 aa22.14■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 CNGB1Q14028 1251 aaPredicted RBP22.13■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 FAM182BQ5T319 152 aa22.13■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 NBPF6Q5VWK0 638 aa22.13■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 NBPF4Q96M43 638 aa22.13■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 USHBP1Q8N6Y0 703 aa22.11■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 EXOC5O00471 708 aa22.1■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 FAM196AQ6ZSG2 479 aa22.1■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 OVOS2A0A0G2JMS6 1433 aa22.09■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 EIF4A2Q14240 407 aaKnown RBP22.09■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 CCDC125Q86Z20 511 aa22.09■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 NCAPD2Q15021 1401 aa22.08■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 MEGF6O75095 1541 aa22.08■■□□□ 1.13
MSH5-SAPCD1-206ENST00000491552 RGPD1P0DJD0 1748 aa22.06■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 MTHFSP49914 203 aa22.06■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 DDX10Q13206 875 aaKnown RBP22.06■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 MARCH10Q8NA82 808 aaPredicted RBP22.06■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 EYA1Q99502 592 aa22.06■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 EP400Q96L91 3159 aa22.05■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 RAPGEF4Q8WZA2 1011 aa22.05■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 SF3B2Q13435 895 aaKnown RBP22.04■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 TATP17735 454 aaPredicted RBP22.03■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 BCL9O00512 1426 aa22.03■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 IGSF1Q8N6C5 1336 aa22.03■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 TNS1Q9HBL0 1735 aaKnown RBP22.03■■□□□ 1.12
MSH5-SAPCD1-206ENST00000491552 SHANK3Q9BYB0 1731 aa22.01■■□□□ 1.11
MSH5-SAPCD1-206ENST00000491552 TRIM37O94972 964 aa22■■□□□ 1.11
MSH5-SAPCD1-206ENST00000491552 ZCRB1Q8TBF4 217 aaKnown RBP22■■□□□ 1.11
MSH5-SAPCD1-206ENST00000491552 IL13P35225 146 aa21.99■■□□□ 1.11
MSH5-SAPCD1-206ENST00000491552 SBF2Q86WG5 1849 aa21.99■■□□□ 1.11
MSH5-SAPCD1-206ENST00000491552 PARD3Q8TEW0 1356 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms