RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MAGEB6P1A0A0J9YX57 407 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 VARSP26640 1264 aaKnown RBP4.57□□□□□ -1.68
HMGB1-208ENST00000490788 PTK2Q05397 1052 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 GPAT2Q6NUI2 795 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 ZBTB33Q86T24 672 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 ARHGAP9Q9BRR9 750 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 NXF1Q9UBU9 619 aaKnown RBP4.57□□□□□ -1.68
HMGB1-208ENST00000490788 NDUFB9Q9Y6M9 179 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 WASF2Q9Y6W5 498 aa4.57□□□□□ -1.68
HMGB1-208ENST00000490788 ALDH1A1P00352 501 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 SKOR1P84550 965 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 ARID5BQ14865 1188 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 PDXDC2PQ6P474 469 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 WWC1Q8IX03 1113 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 Q8N3U1 123 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 CARD14Q9BXL6 1004 aa4.56□□□□□ -1.68
HMGB1-208ENST00000490788 HMX1Q9NP08 348 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-208ENST00000490788 ZNF330Q9Y3S2 320 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-208ENST00000490788 SIAH2O43255 324 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 RAD21O60216 631 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 FLIIQ13045 1269 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 FOXJ1Q92949 421 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 SNRKQ9NRH2 765 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 GPSM3Q9Y4H4 160 aa4.55□□□□□ -1.68
HMGB1-208ENST00000490788 SOCS7O14512 581 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 LCE1DQ5T752 114 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 MTMR14Q8NCE2 650 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 EPS8L1Q8TE68 723 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 ZNF592Q92610 1267 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 SLC10A4Q96EP9 437 aa4.54□□□□□ -1.68
HMGB1-208ENST00000490788 CAPN5O15484 640 aaPredicted RBP4.53□□□□□ -1.68
HMGB1-208ENST00000490788 UBTFP17480 764 aaKnown RBP4.53□□□□□ -1.68
HMGB1-208ENST00000490788 VASH1Q7L8A9 365 aaPredicted RBP4.53□□□□□ -1.68
HMGB1-208ENST00000490788 DZIP3Q86Y13 1208 aaKnown RBP4.53□□□□□ -1.68
HMGB1-208ENST00000490788 TRIM34Q9BYJ4 488 aa4.53□□□□□ -1.68
HMGB1-208ENST00000490788 KRTAP17-1Q9BYP8 105 aa4.53□□□□□ -1.68
HMGB1-208ENST00000490788 CDV3Q9UKY7 258 aaKnown RBP4.53□□□□□ -1.68
HMGB1-208ENST00000490788 ZBBXA8MT70 800 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 H3BM21 787 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 ABL2P42684 1182 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 MCM6Q14566 821 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 SH3BP5LQ7L8J4 393 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 TRIM52Q96A61 297 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 GJD4Q96KN9 370 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-208ENST00000490788 TLL2Q9Y6L7 1015 aa4.52□□□□□ -1.69
HMGB1-208ENST00000490788 NBPF20Q3BBV1 942 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 ERFEQ4G0M1 354 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 TRIM46Q7Z4K8 759 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 SH3RF1Q7Z6J0 888 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 MPNDQ8N594 471 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 ADAM32Q8TC27 787 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 TBC1D2BQ9UPU7 963 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 PCDHB9Q9Y5E1 797 aa4.51□□□□□ -1.69
HMGB1-208ENST00000490788 ADH1CP00326 375 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 FSHRP23945 695 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 MCCD1P59942 119 aaPredicted RBP4.5□□□□□ -1.69
HMGB1-208ENST00000490788 EIF4G2P78344 907 aaKnown RBP eCLIP4.5□□□□□ -1.69
HMGB1-208ENST00000490788 NR1H3Q13133 447 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 NR5A1Q13285 461 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 C4orf48Q5BLP8 95 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 TRMT44Q8IYL2 757 aaKnown RBP4.5□□□□□ -1.69
HMGB1-208ENST00000490788 GDPD2Q9HCC8 539 aa4.5□□□□□ -1.69
HMGB1-208ENST00000490788 FBXO45P0C2W1 286 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 DHX9Q08211 1270 aaKnown RBP4.49□□□□□ -1.69
HMGB1-208ENST00000490788 NNTQ13423 1086 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 WASHC4Q2M389 1173 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 CDK15Q96Q40 435 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 C1QTNF2Q9BXJ5 285 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 ESF1Q9H501 851 aaKnown RBP4.49□□□□□ -1.69
HMGB1-208ENST00000490788 MAP4K5Q9Y4K4 846 aa4.49□□□□□ -1.69
HMGB1-208ENST00000490788 BMP1P13497 986 aa4.48□□□□□ -1.69
HMGB1-208ENST00000490788 RAB15P59190 212 aa4.48□□□□□ -1.69
HMGB1-208ENST00000490788 ZFP42Q96MM3 310 aa4.48□□□□□ -1.69
HMGB1-208ENST00000490788 KCTD15Q96SI1 283 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-208ENST00000490788 KRTAP4-2Q9BYR5 136 aa4.48□□□□□ -1.69
HMGB1-208ENST00000490788 PGPEP1Q9NXJ5 209 aa4.48□□□□□ -1.69
HMGB1-208ENST00000490788 UPP2O95045 317 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 VSIG8P0DPA2 414 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 WDR4P57081 412 aaKnown RBP4.47□□□□□ -1.69
HMGB1-208ENST00000490788 SEMA3FQ13275 785 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 SCARF1Q14162 830 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 RNF20Q5VTR2 975 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 KRTAP19-1Q8IUB9 90 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 CCDC116Q8IYX3 515 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 COG6Q9Y2V7 657 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 EMILIN1Q9Y6C2 1016 aa4.47□□□□□ -1.69
HMGB1-208ENST00000490788 ERBB4Q15303 1308 aa4.46□□□□□ -1.69
HMGB1-208ENST00000490788 VAC14Q08AM6 782 aa4.46□□□□□ -1.7
HMGB1-208ENST00000490788 MRPL14Q6P1L8 145 aaKnown RBP4.46□□□□□ -1.7
HMGB1-208ENST00000490788 CCDC125Q86Z20 511 aa4.46□□□□□ -1.7
HMGB1-208ENST00000490788 KRTAP4-9Q9BYQ8 210 aa4.46□□□□□ -1.7
HMGB1-208ENST00000490788 GTF3C3Q9Y5Q9 886 aa4.46□□□□□ -1.7
HMGB1-208ENST00000490788 ZIC2O95409 532 aaPredicted RBP4.45□□□□□ -1.7
HMGB1-208ENST00000490788 SOX11P35716 441 aa4.45□□□□□ -1.7
HMGB1-208ENST00000490788 GRM5P41594 1212 aa4.45□□□□□ -1.7
HMGB1-208ENST00000490788 VEGFBP49765 207 aa4.45□□□□□ -1.7
HMGB1-208ENST00000490788 SEPT12Q8IYM1 358 aa4.45□□□□□ -1.7
HMGB1-208ENST00000490788 OCSTAMPQ9BR26 566 aa4.45□□□□□ -1.7
HMGB1-208ENST00000490788 NR3C2P08235 984 aa4.44□□□□□ -1.7
HMGB1-208ENST00000490788 SLFNL1Q499Z3 407 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms