RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 AFF2P51816 1311 aa20.13■□□□□ 0.81
COL9A3-209ENST00000469852 NRAPQ86VF7 1730 aa20.13■□□□□ 0.81
COL9A3-209ENST00000469852 SLIT2O94813 1529 aa20.12■□□□□ 0.81
COL9A3-209ENST00000469852 POLKQ9UBT6 870 aa20.12■□□□□ 0.81
COL9A3-209ENST00000469852 AXIN2Q9Y2T1 843 aa20.12■□□□□ 0.81
COL9A3-209ENST00000469852 CDK12Q9NYV4 1490 aaPredicted RBP20.11■□□□□ 0.81
COL9A3-209ENST00000469852 NWD2Q9ULI1 1742 aa20.11■□□□□ 0.81
COL9A3-209ENST00000469852 SMG6Q86US8 1419 aaKnown RBP20.1■□□□□ 0.81
COL9A3-209ENST00000469852 NGLY1Q96IV0 654 aa20.1■□□□□ 0.81
COL9A3-209ENST00000469852 ABCC6O95255 1503 aa20.09■□□□□ 0.81
COL9A3-209ENST00000469852 BTG4Q9NY30 223 aa20.09■□□□□ 0.81
COL9A3-209ENST00000469852 BCL9LQ86UU0 1499 aa20.09■□□□□ 0.81
COL9A3-209ENST00000469852 HOXC9P31274 260 aa20.08■□□□□ 0.81
COL9A3-209ENST00000469852 FNBP4Q8N3X1 1017 aaPredicted RBP20.08■□□□□ 0.81
COL9A3-209ENST00000469852 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.07■□□□□ 0.8
COL9A3-209ENST00000469852 PPM1GO15355 546 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-209ENST00000469852 PPP2R1AP30153 589 aa20.07■□□□□ 0.8
COL9A3-209ENST00000469852 AMPHP49418 695 aa20.07■□□□□ 0.8
COL9A3-209ENST00000469852 IP6K1Q92551 441 aa20.07■□□□□ 0.8
COL9A3-209ENST00000469852 PRKRIP1Q9H875 184 aaPredicted RBP20.07■□□□□ 0.8
COL9A3-209ENST00000469852 RTL1A6NKG5 1358 aa20.07■□□□□ 0.8
COL9A3-209ENST00000469852 COL5A2P05997 1499 aaPredicted RBP20.06■□□□□ 0.8
COL9A3-209ENST00000469852 HSP90AB2PQ58FF8 381 aa20.06■□□□□ 0.8
COL9A3-209ENST00000469852 FLT4P35916 1363 aa20.06■□□□□ 0.8
COL9A3-209ENST00000469852 QTRT2Q9H974 415 aaKnown RBP20.05■□□□□ 0.8
COL9A3-209ENST00000469852 BLMP54132 1417 aaPredicted RBP20.04■□□□□ 0.8
COL9A3-209ENST00000469852 RGPD2P0DJD1 1756 aa20.04■□□□□ 0.8
COL9A3-209ENST00000469852 MTHFSP49914 203 aa20.04■□□□□ 0.8
COL9A3-209ENST00000469852 RALBP1Q15311 655 aa20.04■□□□□ 0.8
COL9A3-209ENST00000469852 USP21Q9UK80 565 aa20.04■□□□□ 0.8
COL9A3-209ENST00000469852 KIF24Q5T7B8 1368 aa20.04■□□□□ 0.8
COL9A3-209ENST00000469852 RGS12O14924 1447 aa20.03■□□□□ 0.8
COL9A3-209ENST00000469852 STRN4Q9NRL3 753 aa20.03■□□□□ 0.8
COL9A3-209ENST00000469852 UNC5CLQ8IV45 518 aa20.02■□□□□ 0.8
COL9A3-209ENST00000469852 INSRP06213 1382 aa20.02■□□□□ 0.8
COL9A3-209ENST00000469852 COL3A1P02461 1466 aaPredicted RBP20.02■□□□□ 0.8
COL9A3-209ENST00000469852 ERBB3P21860 1342 aa20.02■□□□□ 0.79
COL9A3-209ENST00000469852 RBM6P78332 1123 aaKnown RBP20.01■□□□□ 0.79
COL9A3-209ENST00000469852 ANKRD24Q8TF21 1146 aa20.01■□□□□ 0.79
COL9A3-209ENST00000469852 LTV1Q96GA3 475 aaPredicted RBP20.01■□□□□ 0.79
COL9A3-209ENST00000469852 LARP1Q6PKG0 1096 aaKnown RBP20■□□□□ 0.79
COL9A3-209ENST00000469852 ATRNO75882 1429 aa20■□□□□ 0.79
COL9A3-209ENST00000469852 MYBBP1AQ9BQG0 1328 aaKnown RBP20■□□□□ 0.79
COL9A3-209ENST00000469852 DIEXFQ68CQ4 756 aaKnown RBP19.99■□□□□ 0.79
COL9A3-209ENST00000469852 ANP32CO43423 234 aa19.98■□□□□ 0.79
COL9A3-209ENST00000469852 EIF4A2Q14240 407 aaKnown RBP19.98■□□□□ 0.79
COL9A3-209ENST00000469852 WDR17Q8IZU2 1322 aa19.98■□□□□ 0.79
COL9A3-209ENST00000469852 FAM208AQ9UK61 1670 aaKnown RBP19.97■□□□□ 0.79
COL9A3-209ENST00000469852 GLI3P10071 1580 aa19.97■□□□□ 0.79
COL9A3-209ENST00000469852 EVA1CP58658 441 aa19.97■□□□□ 0.79
COL9A3-209ENST00000469852 VPS72Q15906 364 aa19.96■□□□□ 0.79
COL9A3-209ENST00000469852 CRB1P82279 1406 aa19.95■□□□□ 0.78
COL9A3-209ENST00000469852 CSB-PGBD3P0DP91 1061 aa19.95■□□□□ 0.78
COL9A3-209ENST00000469852 RGPD1P0DJD0 1748 aa19.95■□□□□ 0.78
COL9A3-209ENST00000469852 TOM1L2Q6ZVM7 507 aa19.94■□□□□ 0.78
COL9A3-209ENST00000469852 SPATA31A5Q5VU36 1347 aa19.94■□□□□ 0.78
COL9A3-209ENST00000469852 SPATA31A7Q8IWB4 1347 aa19.94■□□□□ 0.78
COL9A3-209ENST00000469852 IL13P35225 146 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 CCDC184Q52MB2 194 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 NBPF6Q5VWK0 638 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 USHBP1Q8N6Y0 703 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 NBPF4Q96M43 638 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 NLRP2Q9NX02 1062 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 USP35Q9P2H5 1018 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 TRPC5Q9UL62 973 aaPredicted RBP19.93■□□□□ 0.78
COL9A3-209ENST00000469852 SPATA31A1Q5TZJ5 1347 aa19.93■□□□□ 0.78
COL9A3-209ENST00000469852 WNK3Q9BYP7 1800 aa19.92■□□□□ 0.78
COL9A3-209ENST00000469852 CCDC9Q9Y3X0 531 aaKnown RBP19.92■□□□□ 0.78
COL9A3-209ENST00000469852 GJD4Q96KN9 370 aaPredicted RBP19.91■□□□□ 0.78
COL9A3-209ENST00000469852 EYA1Q99502 592 aa19.91■□□□□ 0.78
COL9A3-209ENST00000469852 CARD10Q9BWT7 1032 aa19.9■□□□□ 0.78
COL9A3-209ENST00000469852 DIAPH1O60610 1272 aaKnown RBP19.89■□□□□ 0.77
COL9A3-209ENST00000469852 NCAPD2Q15021 1401 aa19.89■□□□□ 0.77
COL9A3-209ENST00000469852 CFAP53Q96M91 514 aa19.89■□□□□ 0.77
COL9A3-209ENST00000469852 IGSF1Q8N6C5 1336 aa19.88■□□□□ 0.77
COL9A3-209ENST00000469852 THSD7AQ9UPZ6 1657 aa19.87■□□□□ 0.77
COL9A3-209ENST00000469852 DISP2A7MBM2 1401 aa19.86■□□□□ 0.77
COL9A3-209ENST00000469852 FAM98CQ17RN3 349 aaKnown RBP19.86■□□□□ 0.77
COL9A3-209ENST00000469852 AEBP1Q8IUX7 1158 aa19.86■□□□□ 0.77
COL9A3-209ENST00000469852 TCP11L2Q8N4U5 519 aa19.86■□□□□ 0.77
COL9A3-209ENST00000469852 MEGF6O75095 1541 aa19.86■□□□□ 0.77
COL9A3-209ENST00000469852 MIER1Q8N108 512 aa19.85■□□□□ 0.77
COL9A3-209ENST00000469852 U2SURPO15042 1029 aaKnown RBP19.84■□□□□ 0.77
COL9A3-209ENST00000469852 LRRC37A3O60309 1634 aa19.83■□□□□ 0.76
COL9A3-209ENST00000469852 PARP4Q9UKK3 1724 aaKnown RBP19.82■□□□□ 0.76
COL9A3-209ENST00000469852 BRWD3Q6RI45 1802 aa19.82■□□□□ 0.76
COL9A3-209ENST00000469852 HMOX1P09601 288 aa19.82■□□□□ 0.76
COL9A3-209ENST00000469852 SULT6B1Q6IMI4 303 aa19.82■□□□□ 0.76
COL9A3-209ENST00000469852 BARGINQ6ZT62 677 aa19.82■□□□□ 0.76
COL9A3-209ENST00000469852 THRAP3Q9Y2W1 955 aaKnown RBP19.82■□□□□ 0.76
COL9A3-209ENST00000469852 KDRP35968 1356 aa19.82■□□□□ 0.76
COL9A3-209ENST00000469852 ONECUT3O60422 494 aaPredicted RBP19.81■□□□□ 0.76
COL9A3-209ENST00000469852 SHANK3Q9BYB0 1731 aa19.8■□□□□ 0.76
COL9A3-209ENST00000469852 MRS2Q9HD23 443 aa19.8■□□□□ 0.76
COL9A3-209ENST00000469852 U2AF1L5P0DN76 240 aaPredicted RBP19.79■□□□□ 0.76
COL9A3-209ENST00000469852 IL2RBP14784 551 aa19.79■□□□□ 0.76
COL9A3-209ENST00000469852 U2AF1Q01081 240 aaKnown RBP eCLIP19.79■□□□□ 0.76
COL9A3-209ENST00000469852 NUDCQ9Y266 331 aa19.79■□□□□ 0.76
COL9A3-209ENST00000469852 OVOS2A0A0G2JMS6 1433 aa19.78■□□□□ 0.76
COL9A3-209ENST00000469852 SEPT12Q8IYM1 358 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms