RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 AXIN2Q9Y2T1 843 aa38.42■■■■□ 3.74
SMARCC1-203ENST00000454240 GLI3P10071 1580 aa38.41■■■■□ 3.74
SMARCC1-203ENST00000454240 FBLN1P23142 703 aa38.41■■■■□ 3.74
SMARCC1-203ENST00000454240 COL5A2P05997 1499 aaPredicted RBP38.41■■■■□ 3.74
SMARCC1-203ENST00000454240 EVA1CP58658 441 aa38.39■■■■□ 3.74
SMARCC1-203ENST00000454240 STRN4Q9NRL3 753 aa38.39■■■■□ 3.74
SMARCC1-203ENST00000454240 NSD2O96028 1365 aa38.39■■■■□ 3.74
SMARCC1-203ENST00000454240 CDK12Q9NYV4 1490 aaPredicted RBP38.38■■■■□ 3.73
SMARCC1-203ENST00000454240 AMER1Q5JTC6 1135 aaPredicted RBP38.36■■■■□ 3.73
SMARCC1-203ENST00000454240 MAP3K19Q56UN5 1328 aa38.36■■■■□ 3.73
SMARCC1-203ENST00000454240 CCDC9Q9Y3X0 531 aaKnown RBP38.35■■■■□ 3.73
SMARCC1-203ENST00000454240 SPATA31A5Q5VU36 1347 aa38.35■■■■□ 3.73
SMARCC1-203ENST00000454240 SPATA31A7Q8IWB4 1347 aa38.35■■■■□ 3.73
SMARCC1-203ENST00000454240 MAP2P11137 1827 aaKnown RBP38.33■■■■□ 3.73
SMARCC1-203ENST00000454240 LARP1Q6PKG0 1096 aaKnown RBP38.32■■■■□ 3.72
SMARCC1-203ENST00000454240 IP6K1Q92551 441 aa38.32■■■■□ 3.72
SMARCC1-203ENST00000454240 RRS1Q15050 365 aaKnown RBP38.31■■■■□ 3.72
SMARCC1-203ENST00000454240 SPATA31A1Q5TZJ5 1347 aa38.3■■■■□ 3.72
SMARCC1-203ENST00000454240 RGS12O14924 1447 aa38.29■■■■□ 3.72
SMARCC1-203ENST00000454240 BLMP54132 1417 aaPredicted RBP38.28■■■■□ 3.72
SMARCC1-203ENST00000454240 ONECUT3O60422 494 aaPredicted RBP38.27■■■■□ 3.72
SMARCC1-203ENST00000454240 WDR17Q8IZU2 1322 aa38.27■■■■□ 3.72
SMARCC1-203ENST00000454240 HOXC9P31274 260 aa38.26■■■■□ 3.72
SMARCC1-203ENST00000454240 AMPHP49418 695 aa38.26■■■■□ 3.72
SMARCC1-203ENST00000454240 RTL1A6NKG5 1358 aa38.26■■■■□ 3.72
SMARCC1-203ENST00000454240 CRB1P82279 1406 aa38.26■■■■□ 3.72
SMARCC1-203ENST00000454240 PEAK1Q9H792 1746 aa38.25■■■■□ 3.71
SMARCC1-203ENST00000454240 NPC1L1Q9UHC9 1359 aa38.25■■■■□ 3.71
SMARCC1-203ENST00000454240 KIF24Q5T7B8 1368 aa38.24■■■■□ 3.71
SMARCC1-203ENST00000454240 MORC1Q86VD1 984 aa38.24■■■■□ 3.71
SMARCC1-203ENST00000454240 ERBB3P21860 1342 aa38.23■■■■□ 3.71
SMARCC1-203ENST00000454240 TNNT2P45379 298 aaPredicted RBP38.21■■■■□ 3.71
SMARCC1-203ENST00000454240 FAM98CQ17RN3 349 aaKnown RBP38.2■■■■□ 3.71
SMARCC1-203ENST00000454240 TOM1L2Q6ZVM7 507 aa38.2■■■■□ 3.71
SMARCC1-203ENST00000454240 ANKRD24Q8TF21 1146 aa38.2■■■■□ 3.71
SMARCC1-203ENST00000454240 EMILIN1Q9Y6C2 1016 aa38.2■■■■□ 3.71
SMARCC1-203ENST00000454240 CSB-PGBD3P0DP91 1061 aa38.19■■■■□ 3.7
SMARCC1-203ENST00000454240 USP35Q9P2H5 1018 aa38.19■■■■□ 3.7
SMARCC1-203ENST00000454240 POLKQ9UBT6 870 aa38.19■■■■□ 3.7
SMARCC1-203ENST00000454240 CC2D1BQ5T0F9 858 aaKnown RBP38.18■■■■□ 3.7
SMARCC1-203ENST00000454240 THRAP3Q9Y2W1 955 aaKnown RBP38.18■■■■□ 3.7
SMARCC1-203ENST00000454240 FLT4P35916 1363 aa38.18■■■■□ 3.7
SMARCC1-203ENST00000454240 BARGINQ6ZT62 677 aa38.17■■■■□ 3.7
SMARCC1-203ENST00000454240 TCP11L2Q8N4U5 519 aa38.17■■■■□ 3.7
SMARCC1-203ENST00000454240 BRWD3Q6RI45 1802 aa38.17■■■■□ 3.7
SMARCC1-203ENST00000454240 CARD10Q9BWT7 1032 aa38.16■■■■□ 3.7
SMARCC1-203ENST00000454240 FAM208AQ9UK61 1670 aaKnown RBP38.16■■■■□ 3.7
SMARCC1-203ENST00000454240 THSD7AQ9UPZ6 1657 aa38.16■■■■□ 3.7
SMARCC1-203ENST00000454240 SEPT12Q8IYM1 358 aa38.15■■■■□ 3.7
SMARCC1-203ENST00000454240 INSRP06213 1382 aa38.15■■■■□ 3.7
SMARCC1-203ENST00000454240 HSP90AB2PQ58FF8 381 aa38.13■■■■□ 3.69
SMARCC1-203ENST00000454240 PPM1GO15355 546 aaPredicted RBP38.11■■■■□ 3.69
SMARCC1-203ENST00000454240 LTV1Q96GA3 475 aaPredicted RBP38.11■■■■□ 3.69
SMARCC1-203ENST00000454240 SMG6Q86US8 1419 aaKnown RBP38.11■■■■□ 3.69
SMARCC1-203ENST00000454240 RGPD2P0DJD1 1756 aa38.11■■■■□ 3.69
SMARCC1-203ENST00000454240 WNK3Q9BYP7 1800 aa38.1■■■■□ 3.69
SMARCC1-203ENST00000454240 DDX10Q13206 875 aaKnown RBP38.1■■■■□ 3.69
SMARCC1-203ENST00000454240 NLRP2Q9NX02 1062 aa38.09■■■■□ 3.69
SMARCC1-203ENST00000454240 A0A0G2JS52 829 aa38.05■■■■□ 3.68
SMARCC1-203ENST00000454240 ZNF316A6NFI3 1004 aaPredicted RBP38.05■■■■□ 3.68
SMARCC1-203ENST00000454240 MYT1Q01538 1121 aa38.05■■■■□ 3.68
SMARCC1-203ENST00000454240 PARP4Q9UKK3 1724 aaKnown RBP38.04■■■■□ 3.68
SMARCC1-203ENST00000454240 CNGB1Q14028 1251 aaPredicted RBP38.04■■■■□ 3.68
SMARCC1-203ENST00000454240 SOCS7O14512 581 aa38.01■■■■□ 3.68
SMARCC1-203ENST00000454240 DISP2A7MBM2 1401 aa38■■■■□ 3.67
SMARCC1-203ENST00000454240 KRT27Q7Z3Y8 459 aa37.99■■■■□ 3.67
SMARCC1-203ENST00000454240 CDCA7Q9BWT1 371 aaPredicted RBP37.99■■■■□ 3.67
SMARCC1-203ENST00000454240 NBPF6Q5VWK0 638 aa37.98■■■■□ 3.67
SMARCC1-203ENST00000454240 NBPF4Q96M43 638 aa37.98■■■■□ 3.67
SMARCC1-203ENST00000454240 MTHFSP49914 203 aa37.95■■■■□ 3.67
SMARCC1-203ENST00000454240 LRRC37A3O60309 1634 aa37.94■■■■□ 3.66
SMARCC1-203ENST00000454240 EIF4A2Q14240 407 aaKnown RBP37.93■■■■□ 3.66
SMARCC1-203ENST00000454240 IL2RBP14784 551 aa37.91■■■■□ 3.66
SMARCC1-203ENST00000454240 EP400Q96L91 3159 aa37.89■■■■□ 3.66
SMARCC1-203ENST00000454240 DDB1Q16531 1140 aa37.89■■■■□ 3.66
SMARCC1-203ENST00000454240 NCAPD2Q15021 1401 aa37.88■■■■□ 3.66
SMARCC1-203ENST00000454240 USHBP1Q8N6Y0 703 aa37.88■■■■□ 3.65
SMARCC1-203ENST00000454240 PDE3BQ13370 1112 aa37.87■■■■□ 3.65
SMARCC1-203ENST00000454240 EYA1Q99502 592 aa37.87■■■■□ 3.65
SMARCC1-203ENST00000454240 PARD3Q8TEW0 1356 aa37.87■■■■□ 3.65
SMARCC1-203ENST00000454240 EXOC5O00471 708 aa37.84■■■■□ 3.65
SMARCC1-203ENST00000454240 PPP2R1AP30153 589 aa37.84■■■■□ 3.65
SMARCC1-203ENST00000454240 FAM182BQ5T319 152 aa37.82■■■■□ 3.64
SMARCC1-203ENST00000454240 TNS2Q63HR2 1409 aa37.81■■■■□ 3.64
SMARCC1-203ENST00000454240 IL13P35225 146 aa37.81■■■■□ 3.64
SMARCC1-203ENST00000454240 UPF1Q92900 1129 aaKnown RBP eCLIP37.81■■■■□ 3.64
SMARCC1-203ENST00000454240 MEGF6O75095 1541 aa37.81■■■■□ 3.64
SMARCC1-203ENST00000454240 RGPD1P0DJD0 1748 aa37.8■■■■□ 3.64
SMARCC1-203ENST00000454240 IGSF1Q8N6C5 1336 aa37.8■■■■□ 3.64
SMARCC1-203ENST00000454240 COL3A1P02461 1466 aaPredicted RBP37.77■■■■□ 3.64
SMARCC1-203ENST00000454240 RALBP1Q15311 655 aa37.77■■■■□ 3.64
SMARCC1-203ENST00000454240 RAPGEF4Q8WZA2 1011 aa37.77■■■■□ 3.64
SMARCC1-203ENST00000454240 OVOS2A0A0G2JMS6 1433 aa37.77■■■■□ 3.64
SMARCC1-203ENST00000454240 MARCH10Q8NA82 808 aaPredicted RBP37.76■■■■□ 3.64
SMARCC1-203ENST00000454240 FAM196AQ6ZSG2 479 aa37.75■■■■□ 3.63
SMARCC1-203ENST00000454240 DIAPH1O60610 1272 aaKnown RBP37.74■■■■□ 3.63
SMARCC1-203ENST00000454240 TATP17735 454 aaPredicted RBP37.74■■■■□ 3.63
SMARCC1-203ENST00000454240 SHANK3Q9BYB0 1731 aa37.74■■■■□ 3.63
SMARCC1-203ENST00000454240 ZCRB1Q8TBF4 217 aaKnown RBP37.7■■■■□ 3.63
SMARCC1-203ENST00000454240 SBF2Q86WG5 1849 aa37.69■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms