RNA–Protein interactions for RNA: ENST00000442971.1

SSXP3-201, Transcript of SSX family pseudogene 3, humanhuman

BASIC

Gene SSXP3, Length 1,300 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSXP3-201ENST00000442971 ZNF326Q5BKZ1 582 aaKnown RBP11.63□□□□□ -0.55
SSXP3-201ENST00000442971 CFAP44Q96MT7 982 aa11.63□□□□□ -0.55
SSXP3-201ENST00000442971 CD2APQ9Y5K6 639 aa11.63□□□□□ -0.55
SSXP3-201ENST00000442971 FMN2Q9NZ56 1722 aa11.63□□□□□ -0.55
SSXP3-201ENST00000442971 PHRF1Q9P1Y6 1649 aaKnown RBP11.63□□□□□ -0.55
SSXP3-201ENST00000442971 LARP1Q6PKG0 1096 aaKnown RBP11.62□□□□□ -0.55
SSXP3-201ENST00000442971 QSER1Q2KHR3 1735 aa11.62□□□□□ -0.55
SSXP3-201ENST00000442971 KIAA0232Q92628 1395 aa11.62□□□□□ -0.55
SSXP3-201ENST00000442971 RGPD8O14715 1765 aaPredicted RBP11.61□□□□□ -0.55
SSXP3-201ENST00000442971 NRXN1Q9ULB1 1477 aa11.61□□□□□ -0.55
SSXP3-201ENST00000442971 PNPLA7Q6ZV29 1317 aa11.6□□□□□ -0.55
SSXP3-201ENST00000442971 CRYBG1Q9Y4K1 1723 aa11.6□□□□□ -0.55
SSXP3-201ENST00000442971 MYOM3Q5VTT5 1437 aa11.6□□□□□ -0.55
SSXP3-201ENST00000442971 C10orf71Q711Q0 1435 aa11.6□□□□□ -0.55
SSXP3-201ENST00000442971 CICQ96RK0 1608 aaPredicted RBP11.59□□□□□ -0.55
SSXP3-201ENST00000442971 BCL9O00512 1426 aa11.59□□□□□ -0.55
SSXP3-201ENST00000442971 ALS2Q96Q42 1657 aa11.59□□□□□ -0.55
SSXP3-201ENST00000442971 DDB1Q16531 1140 aa11.59□□□□□ -0.55
SSXP3-201ENST00000442971 AKT1S1Q96B36 256 aa11.59□□□□□ -0.55
SSXP3-201ENST00000442971 SLC4A1APQ9BWU0 796 aaKnown RBP11.59□□□□□ -0.55
SSXP3-201ENST00000442971 MKRN1Q9UHC7 482 aaKnown RBP11.59□□□□□ -0.55
SSXP3-201ENST00000442971 APLP2Q06481 763 aa11.58□□□□□ -0.56
SSXP3-201ENST00000442971 LRRC37A3O60309 1634 aa11.57□□□□□ -0.56
SSXP3-201ENST00000442971 TRPM3Q9HCF6 1732 aaPredicted RBP11.57□□□□□ -0.56
SSXP3-201ENST00000442971 MARCH10Q8NA82 808 aaPredicted RBP11.57□□□□□ -0.56
SSXP3-201ENST00000442971 RRAGCQ9HB90 399 aa11.57□□□□□ -0.56
SSXP3-201ENST00000442971 IGSF1Q8N6C5 1336 aa11.57□□□□□ -0.56
SSXP3-201ENST00000442971 PXDNLA1KZ92 1463 aa11.56□□□□□ -0.56
SSXP3-201ENST00000442971 E9PCH4 1651 aa11.56□□□□□ -0.56
SSXP3-201ENST00000442971 HSPA8P11142 646 aaKnown RBP11.56□□□□□ -0.56
SSXP3-201ENST00000442971 WAPLQ7Z5K2 1190 aa11.56□□□□□ -0.56
SSXP3-201ENST00000442971 KDM2BQ8NHM5 1336 aa11.56□□□□□ -0.56
SSXP3-201ENST00000442971 ZC3H6P61129 1189 aaKnown RBP11.55□□□□□ -0.56
SSXP3-201ENST00000442971 LRRC4BQ9NT99 713 aa11.55□□□□□ -0.56
SSXP3-201ENST00000442971 WBP1LQ9NX94 342 aa11.55□□□□□ -0.56
SSXP3-201ENST00000442971 TFCP2L1Q9NZI6 479 aa11.54□□□□□ -0.56
SSXP3-201ENST00000442971 PITPNM2Q9BZ72 1349 aa11.54□□□□□ -0.56
SSXP3-201ENST00000442971 AKAP12Q02952 1782 aa11.54□□□□□ -0.56
SSXP3-201ENST00000442971 CUL9Q8IWT3 2517 aa11.53□□□□□ -0.56
SSXP3-201ENST00000442971 TUBGCP6Q96RT7 1819 aa11.53□□□□□ -0.56
SSXP3-201ENST00000442971 KCPQ6ZWJ8 1503 aa11.53□□□□□ -0.56
SSXP3-201ENST00000442971 BRD4O60885 1362 aaPredicted RBP11.53□□□□□ -0.56
SSXP3-201ENST00000442971 GCC1Q96CN9 775 aa11.52□□□□□ -0.57
SSXP3-201ENST00000442971 CLTCL1P53675 1640 aa11.51□□□□□ -0.57
SSXP3-201ENST00000442971 ANKRD30AQ9BXX3 1397 aa11.51□□□□□ -0.57
SSXP3-201ENST00000442971 PLEKHG2Q9H7P9 1386 aa11.51□□□□□ -0.57
SSXP3-201ENST00000442971 CREBZFQ9NS37 354 aa11.51□□□□□ -0.57
SSXP3-201ENST00000442971 TNRC6CQ9HCJ0 1690 aaKnown RBP11.51□□□□□ -0.57
SSXP3-201ENST00000442971 MSL1Q68DK7 614 aa11.5□□□□□ -0.57
SSXP3-201ENST00000442971 SAMD1Q6SPF0 538 aaPredicted RBP11.49□□□□□ -0.57
SSXP3-201ENST00000442971 HIRIP3Q9BW71 556 aaPredicted RBP11.49□□□□□ -0.57
SSXP3-201ENST00000442971 IFT172Q9UG01 1749 aa11.49□□□□□ -0.57
SSXP3-201ENST00000442971 CNTNAP1P78357 1384 aa11.48□□□□□ -0.57
SSXP3-201ENST00000442971 GPRASP1Q5JY77 1395 aa11.48□□□□□ -0.57
SSXP3-201ENST00000442971 PLEKHH1Q9ULM0 1364 aa11.48□□□□□ -0.57
SSXP3-201ENST00000442971 HABP4Q5JVS0 413 aaKnown RBP11.48□□□□□ -0.57
SSXP3-201ENST00000442971 CHIC2Q9UKJ5 165 aa11.48□□□□□ -0.57
SSXP3-201ENST00000442971 NHSQ6T4R5 1651 aa11.47□□□□□ -0.57
SSXP3-201ENST00000442971 C9orf131Q5VYM1 1079 aa11.47□□□□□ -0.57
SSXP3-201ENST00000442971 ARHGAP27Q6ZUM4 889 aa11.47□□□□□ -0.57
SSXP3-201ENST00000442971 CRB1P82279 1406 aa11.47□□□□□ -0.57
SSXP3-201ENST00000442971 ANKRD30BQ9BXX2 1392 aa11.47□□□□□ -0.57
SSXP3-201ENST00000442971 LMO7Q8WWI1 1683 aa11.46□□□□□ -0.57
SSXP3-201ENST00000442971 VGFO15240 615 aaPredicted RBP11.46□□□□□ -0.57
SSXP3-201ENST00000442971 PAK3O75914 559 aaPredicted RBP11.46□□□□□ -0.57
SSXP3-201ENST00000442971 STK26Q9P289 416 aa11.46□□□□□ -0.57
SSXP3-201ENST00000442971 VEGFBP49765 207 aa11.45□□□□□ -0.58
SSXP3-201ENST00000442971 DAPK1P53355 1430 aa11.45□□□□□ -0.58
SSXP3-201ENST00000442971 PKD1L3Q7Z443 1732 aa11.45□□□□□ -0.58
SSXP3-201ENST00000442971 VIRMAQ69YN4 1812 aaKnown RBP11.45□□□□□ -0.58
SSXP3-201ENST00000442971 ACIN1Q9UKV3 1341 aaKnown RBP11.44□□□□□ -0.58
SSXP3-201ENST00000442971 A0A0C4DFX4 3053 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 MYCNP04198 464 aaPredicted RBP11.44□□□□□ -0.58
SSXP3-201ENST00000442971 SLC27A3Q5K4L6 730 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 COL23A1Q86Y22 540 aaPredicted RBP11.44□□□□□ -0.58
SSXP3-201ENST00000442971 SLC17A8Q8NDX2 589 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 ACSBG1Q96GR2 724 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 MCOLN1Q9GZU1 580 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 SPINK5Q9NQ38 1064 aaPredicted RBP11.44□□□□□ -0.58
SSXP3-201ENST00000442971 BTAF1O14981 1849 aa11.44□□□□□ -0.58
SSXP3-201ENST00000442971 COL5A2P05997 1499 aaPredicted RBP11.43□□□□□ -0.58
SSXP3-201ENST00000442971 VEGFAP15692 232 aaPredicted RBP11.41□□□□□ -0.58
SSXP3-201ENST00000442971 CDCA7Q9BWT1 371 aaPredicted RBP11.41□□□□□ -0.58
SSXP3-201ENST00000442971 WNK3Q9BYP7 1800 aa11.41□□□□□ -0.58
SSXP3-201ENST00000442971 USP6P35125 1406 aa11.41□□□□□ -0.58
SSXP3-201ENST00000442971 ANKRD50Q9ULJ7 1429 aa11.41□□□□□ -0.58
SSXP3-201ENST00000442971 MAP2K1Q02750 393 aaPredicted RBP11.4□□□□□ -0.58
SSXP3-201ENST00000442971 BCS1LQ9Y276 419 aa11.4□□□□□ -0.58
SSXP3-201ENST00000442971 TRPM1Q7Z4N2 1603 aa11.4□□□□□ -0.58
SSXP3-201ENST00000442971 CPDO75976 1380 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 FXR1P51114 621 aaKnown RBP eCLIP11.39□□□□□ -0.59
SSXP3-201ENST00000442971 KCNQ4P56696 695 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 MPNDQ8N594 471 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 FOXD4L1Q9NU39 408 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
SSXP3-201ENST00000442971 PIK3C2AO00443 1686 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 ABCC11Q96J66 1382 aa11.39□□□□□ -0.59
SSXP3-201ENST00000442971 EXOC5O00471 708 aa11.38□□□□□ -0.59
SSXP3-201ENST00000442971 SOX10P56693 466 aa11.38□□□□□ -0.59
SSXP3-201ENST00000442971 KAT6BQ8WYB5 2073 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms