RNA–Protein interactions for RNA: ENST00000442216.1

CSNK1E-210, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 787 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-210ENST00000442216 SOCS7O14512 581 aa20.71■□□□□ 0.91
CSNK1E-210ENST00000442216 SOX12O15370 315 aa20.71■□□□□ 0.91
CSNK1E-210ENST00000442216 CCDC9Q9Y3X0 531 aaKnown RBP20.71■□□□□ 0.91
CSNK1E-210ENST00000442216 SPATA31A5Q5VU36 1347 aa20.71■□□□□ 0.91
CSNK1E-210ENST00000442216 SPATA31A7Q8IWB4 1347 aa20.71■□□□□ 0.91
CSNK1E-210ENST00000442216 ONECUT3O60422 494 aaPredicted RBP20.7■□□□□ 0.9
CSNK1E-210ENST00000442216 ZBTB7CA1YPR0 619 aa20.69■□□□□ 0.9
CSNK1E-210ENST00000442216 STRN4Q9NRL3 753 aa20.69■□□□□ 0.9
CSNK1E-210ENST00000442216 WASHC2AQ641Q2 1341 aa20.69■□□□□ 0.9
CSNK1E-210ENST00000442216 AXIN2Q9Y2T1 843 aa20.68■□□□□ 0.9
CSNK1E-210ENST00000442216 SPATA31A1Q5TZJ5 1347 aa20.68■□□□□ 0.9
CSNK1E-210ENST00000442216 NSD2O96028 1365 aa20.68■□□□□ 0.9
CSNK1E-210ENST00000442216 BRWD3Q6RI45 1802 aa20.67■□□□□ 0.9
CSNK1E-210ENST00000442216 CRB1P82279 1406 aa20.67■□□□□ 0.9
CSNK1E-210ENST00000442216 MAP2P11137 1827 aaKnown RBP20.67■□□□□ 0.9
CSNK1E-210ENST00000442216 LARP1Q6PKG0 1096 aaKnown RBP20.66■□□□□ 0.9
CSNK1E-210ENST00000442216 BLMP54132 1417 aaPredicted RBP20.66■□□□□ 0.9
CSNK1E-210ENST00000442216 FAM208AQ9UK61 1670 aaKnown RBP20.65■□□□□ 0.9
CSNK1E-210ENST00000442216 THSD7AQ9UPZ6 1657 aa20.65■□□□□ 0.9
CSNK1E-210ENST00000442216 WDR17Q8IZU2 1322 aa20.65■□□□□ 0.9
CSNK1E-210ENST00000442216 THRAP3Q9Y2W1 955 aaKnown RBP20.65■□□□□ 0.9
CSNK1E-210ENST00000442216 KNSTRNQ9Y448 316 aa20.65■□□□□ 0.9
CSNK1E-210ENST00000442216 RTL1A6NKG5 1358 aa20.64■□□□□ 0.89
CSNK1E-210ENST00000442216 KIF24Q5T7B8 1368 aa20.64■□□□□ 0.89
CSNK1E-210ENST00000442216 BARGINQ6ZT62 677 aa20.64■□□□□ 0.89
CSNK1E-210ENST00000442216 IP6K1Q92551 441 aa20.64■□□□□ 0.89
CSNK1E-210ENST00000442216 MAP3K19Q56UN5 1328 aa20.63■□□□□ 0.89
CSNK1E-210ENST00000442216 WNK3Q9BYP7 1800 aa20.62■□□□□ 0.89
CSNK1E-210ENST00000442216 SEPT12Q8IYM1 358 aa20.62■□□□□ 0.89
CSNK1E-210ENST00000442216 TCP11L2Q8N4U5 519 aa20.62■□□□□ 0.89
CSNK1E-210ENST00000442216 ERBB3P21860 1342 aa20.61■□□□□ 0.89
CSNK1E-210ENST00000442216 PER1O15534 1290 aaPredicted RBP20.61■□□□□ 0.89
CSNK1E-210ENST00000442216 FAM98CQ17RN3 349 aaKnown RBP20.61■□□□□ 0.89
CSNK1E-210ENST00000442216 TOM1L2Q6ZVM7 507 aa20.61■□□□□ 0.89
CSNK1E-210ENST00000442216 HOXC9P31274 260 aa20.6■□□□□ 0.89
CSNK1E-210ENST00000442216 AMPHP49418 695 aa20.6■□□□□ 0.89
CSNK1E-210ENST00000442216 PARP4Q9UKK3 1724 aaKnown RBP20.6■□□□□ 0.89
CSNK1E-210ENST00000442216 CSB-PGBD3P0DP91 1061 aa20.59■□□□□ 0.89
CSNK1E-210ENST00000442216 FBLN1P23142 703 aa20.59■□□□□ 0.89
CSNK1E-210ENST00000442216 CARD10Q9BWT7 1032 aa20.59■□□□□ 0.89
CSNK1E-210ENST00000442216 PEAK1Q9H792 1746 aa20.58■□□□□ 0.89
CSNK1E-210ENST00000442216 RRS1Q15050 365 aaKnown RBP20.58■□□□□ 0.89
CSNK1E-210ENST00000442216 AMER1Q5JTC6 1135 aaPredicted RBP20.58■□□□□ 0.89
CSNK1E-210ENST00000442216 USP35Q9P2H5 1018 aa20.58■□□□□ 0.89
CSNK1E-210ENST00000442216 FLT4P35916 1363 aa20.58■□□□□ 0.88
CSNK1E-210ENST00000442216 ANKRD24Q8TF21 1146 aa20.57■□□□□ 0.88
CSNK1E-210ENST00000442216 NPC1L1Q9UHC9 1359 aa20.57■□□□□ 0.88
CSNK1E-210ENST00000442216 A0A0G2JS52 829 aa20.55■□□□□ 0.88
CSNK1E-210ENST00000442216 MYT1Q01538 1121 aa20.55■□□□□ 0.88
CSNK1E-210ENST00000442216 CDCA7Q9BWT1 371 aaPredicted RBP20.55■□□□□ 0.88
CSNK1E-210ENST00000442216 INSRP06213 1382 aa20.55■□□□□ 0.88
CSNK1E-210ENST00000442216 RGPD2P0DJD1 1756 aa20.54■□□□□ 0.88
CSNK1E-210ENST00000442216 KRT27Q7Z3Y8 459 aa20.54■□□□□ 0.88
CSNK1E-210ENST00000442216 MORC1Q86VD1 984 aa20.54■□□□□ 0.88
CSNK1E-210ENST00000442216 SMG6Q86US8 1419 aaKnown RBP20.53■□□□□ 0.88
CSNK1E-210ENST00000442216 NLRP2Q9NX02 1062 aa20.52■□□□□ 0.88
CSNK1E-210ENST00000442216 POLKQ9UBT6 870 aa20.52■□□□□ 0.88
CSNK1E-210ENST00000442216 EMILIN1Q9Y6C2 1016 aa20.52■□□□□ 0.88
CSNK1E-210ENST00000442216 LRRC37A3O60309 1634 aa20.51■□□□□ 0.87
CSNK1E-210ENST00000442216 DISP2A7MBM2 1401 aa20.51■□□□□ 0.87
CSNK1E-210ENST00000442216 HSP90AB2PQ58FF8 381 aa20.5■□□□□ 0.87
CSNK1E-210ENST00000442216 UPF1Q92900 1129 aaKnown RBP eCLIP20.5■□□□□ 0.87
CSNK1E-210ENST00000442216 LTV1Q96GA3 475 aaPredicted RBP20.49■□□□□ 0.87
CSNK1E-210ENST00000442216 TNNT2P45379 298 aaPredicted RBP20.48■□□□□ 0.87
CSNK1E-210ENST00000442216 PDE3BQ13370 1112 aa20.47■□□□□ 0.87
CSNK1E-210ENST00000442216 CCDC125Q86Z20 511 aa20.47■□□□□ 0.87
CSNK1E-210ENST00000442216 PPM1GO15355 546 aaPredicted RBP20.46■□□□□ 0.87
CSNK1E-210ENST00000442216 IL2RBP14784 551 aa20.46■□□□□ 0.87
CSNK1E-210ENST00000442216 DDB1Q16531 1140 aa20.46■□□□□ 0.87
CSNK1E-210ENST00000442216 CC2D1BQ5T0F9 858 aaKnown RBP20.45■□□□□ 0.86
CSNK1E-210ENST00000442216 EXOC5O00471 708 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 NBPF6Q5VWK0 638 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 FAM196AQ6ZSG2 479 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 NBPF4Q96M43 638 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 RGPD1P0DJD0 1748 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 NCAPD2Q15021 1401 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 TNS2Q63HR2 1409 aa20.43■□□□□ 0.86
CSNK1E-210ENST00000442216 SBF2Q86WG5 1849 aa20.41■□□□□ 0.86
CSNK1E-210ENST00000442216 OVOS2A0A0G2JMS6 1433 aa20.4■□□□□ 0.86
CSNK1E-210ENST00000442216 BCL9O00512 1426 aa20.4■□□□□ 0.86
CSNK1E-210ENST00000442216 EIF4A2Q14240 407 aaKnown RBP20.38■□□□□ 0.85
CSNK1E-210ENST00000442216 SHANK3Q9BYB0 1731 aa20.37■□□□□ 0.85
CSNK1E-210ENST00000442216 TNS1Q9HBL0 1735 aaKnown RBP20.37■□□□□ 0.85
CSNK1E-210ENST00000442216 MTHFSP49914 203 aa20.37■□□□□ 0.85
CSNK1E-210ENST00000442216 FAM182BQ5T319 152 aa20.37■□□□□ 0.85
CSNK1E-210ENST00000442216 EYA1Q99502 592 aa20.37■□□□□ 0.85
CSNK1E-210ENST00000442216 MARCH10Q8NA82 808 aaPredicted RBP20.36■□□□□ 0.85
CSNK1E-210ENST00000442216 RAPGEF4Q8WZA2 1011 aa20.36■□□□□ 0.85
CSNK1E-210ENST00000442216 MEGF6O75095 1541 aa20.36■□□□□ 0.85
CSNK1E-210ENST00000442216 EP400Q96L91 3159 aa20.36■□□□□ 0.85
CSNK1E-210ENST00000442216 PLEKHG2Q9H7P9 1386 aa20.35■□□□□ 0.85
CSNK1E-210ENST00000442216 DDX10Q13206 875 aaKnown RBP20.35■□□□□ 0.85
CSNK1E-210ENST00000442216 SF3B2Q13435 895 aaKnown RBP20.35■□□□□ 0.85
CSNK1E-210ENST00000442216 USHBP1Q8N6Y0 703 aa20.35■□□□□ 0.85
CSNK1E-210ENST00000442216 PKD1L3Q7Z443 1732 aa20.35■□□□□ 0.85
CSNK1E-210ENST00000442216 IGSF1Q8N6C5 1336 aa20.34■□□□□ 0.85
CSNK1E-210ENST00000442216 TATP17735 454 aaPredicted RBP20.34■□□□□ 0.85
CSNK1E-210ENST00000442216 ZCRB1Q8TBF4 217 aaKnown RBP20.32■□□□□ 0.84
CSNK1E-210ENST00000442216 KAT6BQ8WYB5 2073 aa20.31■□□□□ 0.84
CSNK1E-210ENST00000442216 IL13P35225 146 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms