RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, human

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-209	ENST00000425836	ATRN	O75882	1429 aa		33.38	■■■□□ 2.93
VEGFA-209	ENST00000425836	NWD2	Q9ULI1	1742 aa		33.37	■■■□□ 2.93
VEGFA-209	ENST00000425836	EVA1C	P58658	441 aa		33.37	■■■□□ 2.93
VEGFA-209	ENST00000425836	IP6K1	Q92551	441 aa		33.37	■■■□□ 2.93
VEGFA-209	ENST00000425836	AMPH	P49418	695 aa		33.36	■■■□□ 2.93
VEGFA-209	ENST00000425836	VPS72	Q15906	364 aa		33.36	■■■□□ 2.93
VEGFA-209	ENST00000425836	COL18A1	P39060	1754 aa		33.36	■■■□□ 2.93
VEGFA-209	ENST00000425836	ANKRD26	Q9UPS8	1709 aa		33.35	■■■□□ 2.93
VEGFA-209	ENST00000425836	POLK	Q9UBT6	870 aa		33.34	■■■□□ 2.93
VEGFA-209	ENST00000425836	EMILIN1	Q9Y6C2	1016 aa		33.34	■■■□□ 2.93
VEGFA-209	ENST00000425836	HOXC9	P31274	260 aa		33.34	■■■□□ 2.93
VEGFA-209	ENST00000425836	ABCC6	O95255	1503 aa		33.33	■■■□□ 2.93
VEGFA-209	ENST00000425836	COL5A2	P05997	1499 aa	Predicted RBP	33.33	■■■□□ 2.93
VEGFA-209	ENST00000425836	NRAP	Q86VF7	1730 aa		33.32	■■■□□ 2.92
VEGFA-209	ENST00000425836	LARP1	Q6PKG0	1096 aa	Known RBP	33.31	■■■□□ 2.92
VEGFA-209	ENST00000425836	GJD4	Q96KN9	370 aa	Predicted RBP	33.31	■■■□□ 2.92
VEGFA-209	ENST00000425836	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	33.3	■■■□□ 2.92
VEGFA-209	ENST00000425836	CCDC9	Q9Y3X0	531 aa	Known RBP	33.3	■■■□□ 2.92
VEGFA-209	ENST00000425836	RTL1	A6NKG5	1358 aa		33.3	■■■□□ 2.92
VEGFA-209	ENST00000425836	LTN1	O94822	1766 aa		33.3	■■■□□ 2.92
VEGFA-209	ENST00000425836	RXRB	P28702	533 aa		33.3	■■■□□ 2.92
VEGFA-209	ENST00000425836	RBM6	P78332	1123 aa	Known RBP	33.29	■■■□□ 2.92
VEGFA-209	ENST00000425836	KIF24	Q5T7B8	1368 aa		33.28	■■■□□ 2.92
VEGFA-209	ENST00000425836	BLM	P54132	1417 aa	Predicted RBP	33.28	■■■□□ 2.92
VEGFA-209	ENST00000425836	PPM1G	O15355	546 aa	Predicted RBP	33.28	■■■□□ 2.92
VEGFA-209	ENST00000425836	SPATA31A5	Q5VU36	1347 aa		33.27	■■■□□ 2.92
VEGFA-209	ENST00000425836	SPATA31A7	Q8IWB4	1347 aa		33.27	■■■□□ 2.92
VEGFA-209	ENST00000425836	FLT4	P35916	1363 aa		33.27	■■■□□ 2.92
VEGFA-209	ENST00000425836	HSP90AB2P	Q58FF8	381 aa		33.26	■■■□□ 2.92
VEGFA-209	ENST00000425836	WDR17	Q8IZU2	1322 aa		33.26	■■■□□ 2.92
VEGFA-209	ENST00000425836	ANKRD24	Q8TF21	1146 aa		33.26	■■■□□ 2.91
VEGFA-209	ENST00000425836	ERBB3	P21860	1342 aa		33.25	■■■□□ 2.91
VEGFA-209	ENST00000425836	CSB-PGBD3	P0DP91	1061 aa		33.25	■■■□□ 2.91
VEGFA-209	ENST00000425836	SPATA31A1	Q5TZJ5	1347 aa		33.23	■■■□□ 2.91
VEGFA-209	ENST00000425836	LTV1	Q96GA3	475 aa	Predicted RBP	33.23	■■■□□ 2.91
VEGFA-209	ENST00000425836	PEAK1	Q9H792	1746 aa		33.23	■■■□□ 2.91
VEGFA-209	ENST00000425836	INSR	P06213	1382 aa		33.22	■■■□□ 2.91
VEGFA-209	ENST00000425836	TOM1L2	Q6ZVM7	507 aa		33.22	■■■□□ 2.91
VEGFA-209	ENST00000425836	CRB1	P82279	1406 aa		33.21	■■■□□ 2.91
VEGFA-209	ENST00000425836	USP35	Q9P2H5	1018 aa		33.21	■■■□□ 2.91
VEGFA-209	ENST00000425836	SMG6	Q86US8	1419 aa	Known RBP	33.2	■■■□□ 2.91
VEGFA-209	ENST00000425836	GLI3	P10071	1580 aa		33.19	■■■□□ 2.9
VEGFA-209	ENST00000425836	RGPD5	Q99666	1765 aa		33.19	■■■□□ 2.9
VEGFA-209	ENST00000425836	MTHFS	P49914	203 aa		33.17	■■■□□ 2.9
VEGFA-209	ENST00000425836	CARD10	Q9BWT7	1032 aa		33.17	■■■□□ 2.9
VEGFA-209	ENST00000425836	MAP2	P11137	1827 aa	Known RBP	33.16	■■■□□ 2.9
VEGFA-209	ENST00000425836	TCP11L2	Q8N4U5	519 aa		33.16	■■■□□ 2.9
VEGFA-209	ENST00000425836	NLRP2	Q9NX02	1062 aa		33.16	■■■□□ 2.9
VEGFA-209	ENST00000425836	PARD3	Q8TEW0	1356 aa		33.16	■■■□□ 2.9
VEGFA-209	ENST00000425836	FAM98C	Q17RN3	349 aa	Known RBP	33.15	■■■□□ 2.9
VEGFA-209	ENST00000425836	ONECUT3	O60422	494 aa	Predicted RBP	33.14	■■■□□ 2.9
VEGFA-209	ENST00000425836	ILDR2	Q71H61	639 aa		33.13	■■■□□ 2.89
VEGFA-209	ENST00000425836	THRAP3	Q9Y2W1	955 aa	Known RBP	33.13	■■■□□ 2.89
VEGFA-209	ENST00000425836	PPP2R1A	P30153	589 aa		33.13	■■■□□ 2.89
VEGFA-209	ENST00000425836	BARGIN	Q6ZT62	677 aa		33.12	■■■□□ 2.89
VEGFA-209	ENST00000425836	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.11	■■■□□ 2.89
VEGFA-209	ENST00000425836	RALBP1	Q15311	655 aa		33.1	■■■□□ 2.89
VEGFA-209	ENST00000425836	EIF4A2	Q14240	407 aa	Known RBP	33.09	■■■□□ 2.89
VEGFA-209	ENST00000425836	NBPF6	Q5VWK0	638 aa		33.09	■■■□□ 2.89
VEGFA-209	ENST00000425836	NBPF4	Q96M43	638 aa		33.09	■■■□□ 2.89
VEGFA-209	ENST00000425836	RGS12	O14924	1447 aa		33.09	■■■□□ 2.89
VEGFA-209	ENST00000425836	SEPT12	Q8IYM1	358 aa		33.08	■■■□□ 2.89
VEGFA-209	ENST00000425836		A0A0G2JS52	829 aa		33.04	■■■□□ 2.88
VEGFA-209	ENST00000425836	MYT1	Q01538	1121 aa		33.04	■■■□□ 2.88
VEGFA-209	ENST00000425836	PRKRIP1	Q9H875	184 aa	Predicted RBP	33.04	■■■□□ 2.88
VEGFA-209	ENST00000425836	USHBP1	Q8N6Y0	703 aa		33.03	■■■□□ 2.88
VEGFA-209	ENST00000425836	EYA1	Q99502	592 aa		33.03	■■■□□ 2.88
VEGFA-209	ENST00000425836	IL13	P35225	146 aa		33.01	■■■□□ 2.88
VEGFA-209	ENST00000425836	CDCA7	Q9BWT1	371 aa	Predicted RBP	32.99	■■■□□ 2.87
VEGFA-209	ENST00000425836	FAM208A	Q9UK61	1670 aa	Known RBP	32.99	■■■□□ 2.87
VEGFA-209	ENST00000425836	DISP2	A7MBM2	1401 aa		32.99	■■■□□ 2.87
VEGFA-209	ENST00000425836	DIAPH1	O60610	1272 aa	Known RBP	32.97	■■■□□ 2.87
VEGFA-209	ENST00000425836	IL2RB	P14784	551 aa		32.97	■■■□□ 2.87
VEGFA-209	ENST00000425836	CFAP53	Q96M91	514 aa		32.97	■■■□□ 2.87
VEGFA-209	ENST00000425836	THSD7A	Q9UPZ6	1657 aa		32.97	■■■□□ 2.87
VEGFA-209	ENST00000425836	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.96	■■■□□ 2.87
VEGFA-209	ENST00000425836	COL3A1	P02461	1466 aa	Predicted RBP	32.95	■■■□□ 2.87
VEGFA-209	ENST00000425836	IGSF1	Q8N6C5	1336 aa		32.94	■■■□□ 2.86
VEGFA-209	ENST00000425836	NCAPD2	Q15021	1401 aa		32.94	■■■□□ 2.86
VEGFA-209	ENST00000425836	RGPD2	P0DJD1	1756 aa		32.93	■■■□□ 2.86
VEGFA-209	ENST00000425836	KRT27	Q7Z3Y8	459 aa		32.92	■■■□□ 2.86
VEGFA-209	ENST00000425836	DDB1	Q16531	1140 aa		32.91	■■■□□ 2.86
VEGFA-209	ENST00000425836	ANP32C	O43423	234 aa		32.89	■■■□□ 2.86
VEGFA-209	ENST00000425836	RAPGEF4	Q8WZA2	1011 aa		32.89	■■■□□ 2.86
VEGFA-209	ENST00000425836	EXOC5	O00471	708 aa		32.88	■■■□□ 2.85
VEGFA-209	ENST00000425836	MEGF6	O75095	1541 aa		32.88	■■■□□ 2.85
VEGFA-209	ENST00000425836	PDE3B	Q13370	1112 aa		32.87	■■■□□ 2.85
VEGFA-209	ENST00000425836	AEBP1	Q8IUX7	1158 aa		32.87	■■■□□ 2.85
VEGFA-209	ENST00000425836	TAT	P17735	454 aa	Predicted RBP	32.86	■■■□□ 2.85
VEGFA-209	ENST00000425836	SULT6B1	Q6IMI4	303 aa		32.86	■■■□□ 2.85
VEGFA-209	ENST00000425836	PARP4	Q9UKK3	1724 aa	Known RBP	32.85	■■■□□ 2.85
VEGFA-209	ENST00000425836	U2SURP	O15042	1029 aa	Known RBP	32.84	■■■□□ 2.85
VEGFA-209	ENST00000425836	WNK3	Q9BYP7	1800 aa		32.84	■■■□□ 2.85
VEGFA-209	ENST00000425836	NUDC	Q9Y266	331 aa		32.83	■■■□□ 2.85
VEGFA-209	ENST00000425836	OVOS2	A0A0G2JMS6	1433 aa		32.83	■■■□□ 2.85
VEGFA-209	ENST00000425836	RGPD1	P0DJD0	1748 aa		32.82	■■■□□ 2.84
VEGFA-209	ENST00000425836	LRRC37A3	O60309	1634 aa		32.82	■■■□□ 2.84
VEGFA-209	ENST00000425836	TNS2	Q63HR2	1409 aa		32.82	■■■□□ 2.84
VEGFA-209	ENST00000425836	KDR	P35968	1356 aa		32.82	■■■□□ 2.84
VEGFA-209	ENST00000425836	FAM182B	Q5T319	152 aa		32.82	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms